Abdullah Kahraman

Summary

Affiliation: Wellcome Trust Genome Campus
Country: UK

Publications

  1. ncbi Shape variation in protein binding pockets and their ligands
    Abdullah Kahraman
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK
    J Mol Biol 368:283-301. 2007
  2. doi On the diversity of physicochemical environments experienced by identical ligands in binding pockets of unrelated proteins
    Abdullah Kahraman
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD, United Kingdom
    Proteins 78:1120-36. 2010
  3. ncbi Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons
    Richard J Morris
    EMBL EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Bioinformatics 21:2347-55. 2005

Detail Information

Publications3

  1. ncbi Shape variation in protein binding pockets and their ligands
    Abdullah Kahraman
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK
    J Mol Biol 368:283-301. 2007
    ..Additionally, we observe a "buffer zone" or a region of free space between the ligand and protein, which results in binding pockets being on average three times larger than the ligand that they bind...
  2. doi On the diversity of physicochemical environments experienced by identical ligands in binding pockets of unrelated proteins
    Abdullah Kahraman
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD, United Kingdom
    Proteins 78:1120-36. 2010
    ..The presented results highlight the complexities of molecular recognition and underline the challenges of computational structural biology in developing methods to detect these important subtleties...
  3. ncbi Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons
    Richard J Morris
    EMBL EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Bioinformatics 21:2347-55. 2005
    ....