Sarah Hunter

Summary

Affiliation: Wellcome Trust Genome Campus
Country: UK

Publications

  1. pmc InterPro: the integrative protein signature database
    Sarah Hunter
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Nucleic Acids Res 37:D211-5. 2009
  2. pmc Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation
    Sarah Burge
    EMBL EBI, The Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK
    Database (Oxford) 2012:bar068. 2012
  3. pmc InterPro in 2011: new developments in the family and domain prediction database
    Sarah Hunter
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD Cambridge, UK
    Nucleic Acids Res 40:D306-12. 2012
  4. pmc New developments in the InterPro database
    Nicola J Mulder
    EMBL Outstation European Bioinformatics Institute Hinxton, Cambridge, UK
    Nucleic Acids Res 35:D224-8. 2007
  5. pmc EBI metagenomics--a new resource for the analysis and archiving of metagenomic data
    Sarah Hunter
    European Molecular Biology Laboratory, European Bioinformatics Institute EMBL EBI, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK, Oxford e Research Centre, University of Oxford, 7 Keble Road, Oxford, OX1 3QG, UK and NERC Centre for Ecology and Hydrology, Maclean Building, Benson Lane, Crowmarsh Gifford, Wallingford, OX10 8BB, UK
    Nucleic Acids Res 42:D600-6. 2014
  6. pmc InterProScan 5: genome-scale protein function classification
    Philip Jones
    European Molecular Biology Laboratory, European Bioinformatics Institute EMBL EBI, Wellcome Trust Genome Campus, Hinxton CB10 1SD and Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton CB10 1SA, UK
    Bioinformatics 30:1236-40. 2014
  7. pmc The InterPro BioMart: federated query and web service access to the InterPro Resource
    Philip Jones
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
    Database (Oxford) 2011:bar033. 2011
  8. pmc Metagenomic analysis: the challenge of the data bonanza
    Chris I Hunter
    European Bioinformatics Institute, Cambridge, UK
    Brief Bioinform 13:743-6. 2012

Detail Information

Publications8

  1. pmc InterPro: the integrative protein signature database
    Sarah Hunter
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Nucleic Acids Res 37:D211-5. 2009
    ..InterPro data may be accessed either via the web address above, via web services, by downloading files by anonymous FTP or by using the InterProScan search software (http://www.ebi.ac.uk/Tools/InterProScan/)...
  2. pmc Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation
    Sarah Burge
    EMBL EBI, The Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK
    Database (Oxford) 2012:bar068. 2012
    ..Database URL: http://www.ebi.ac.uk/interpro. The complete InterPro2GO mappings are available at: ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/external2go/interpro2go...
  3. pmc InterPro in 2011: new developments in the family and domain prediction database
    Sarah Hunter
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD Cambridge, UK
    Nucleic Acids Res 40:D306-12. 2012
    ..Herein we give an overview of new developments in the database and its associated software since 2009, including updates to database content, curation processes and Web and programmatic interfaces...
  4. pmc New developments in the InterPro database
    Nicola J Mulder
    EMBL Outstation European Bioinformatics Institute Hinxton, Cambridge, UK
    Nucleic Acids Res 35:D224-8. 2007
    ..ebi.ac.uk/interpro), and for download by anonymous FTP (ftp://ftp.ebi.ac.uk/pub/databases/interpro). The InterProScan search tool is now also available via a web service at http://www.ebi.ac.uk/Tools/webservices/WSInterProScan.html...
  5. pmc EBI metagenomics--a new resource for the analysis and archiving of metagenomic data
    Sarah Hunter
    European Molecular Biology Laboratory, European Bioinformatics Institute EMBL EBI, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK, Oxford e Research Centre, University of Oxford, 7 Keble Road, Oxford, OX1 3QG, UK and NERC Centre for Ecology and Hydrology, Maclean Building, Benson Lane, Crowmarsh Gifford, Wallingford, OX10 8BB, UK
    Nucleic Acids Res 42:D600-6. 2014
    ....
  6. pmc InterProScan 5: genome-scale protein function classification
    Philip Jones
    European Molecular Biology Laboratory, European Bioinformatics Institute EMBL EBI, Wellcome Trust Genome Campus, Hinxton CB10 1SD and Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton CB10 1SA, UK
    Bioinformatics 30:1236-40. 2014
    ..InterProScan is freely available for download from the EMBl-EBI FTP site and the open source code is hosted at Google Code...
  7. pmc The InterPro BioMart: federated query and web service access to the InterPro Resource
    Philip Jones
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
    Database (Oxford) 2011:bar033. 2011
    ..Database URL: http://www.ebi.ac.uk/interpro/biomart/martview...
  8. pmc Metagenomic analysis: the challenge of the data bonanza
    Chris I Hunter
    European Bioinformatics Institute, Cambridge, UK
    Brief Bioinform 13:743-6. 2012
    ..Herein, we describe some of the bioinformatic approaches currently used by metagenomics researchers to analyze their data, the issues they face and the steps that could be taken to help overcome these challenges...