K Henrick

Summary

Affiliation: Wellcome Trust Genome Campus
Country: UK

Publications

  1. pmc E-MSD: an integrated data resource for bioinformatics
    S Velankar
    Macromolecular Structure Database Group E MSD, EMBL Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 33:D262-5. 2005
  2. pmc MSDmotif: exploring protein sites and motifs
    Adel Golovin
    EMBL Outstation, The European Bioinformatics Institute, Welcome Trust Genome Campus, Hinxton, Cambridge, UK
    BMC Bioinformatics 9:312. 2008
  3. ncbi request reprint EMDep: a web-based system for the deposition and validation of high-resolution electron microscopy macromolecular structural information
    K Henrick
    EMBL Outstation, The European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    J Struct Biol 144:228-37. 2003
  4. pmc PDBe: Protein Data Bank in Europe
    S Velankar
    Protein Databank in Europe, EMBL EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 38:D308-17. 2010
  5. pmc E-MSD: improving data deposition and structure quality
    M Tagari
    Macromolecular Structure Database, EMBL Outstation, European Bioinformatics Institute Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 34:D287-90. 2006
  6. pmc E-MSD: an integrated data resource for bioinformatics
    A Golovin
    EMBL Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 32:D211-6. 2004
  7. pmc SOAP-based services provided by the European Bioinformatics Institute
    S Pillai
    European Bioinformatics Institute Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 33:W25-8. 2005
  8. ncbi request reprint Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
    E Krissinel
    European Bioinformatics Institute, Genome Campus, Hinxton, Cambridge CB10 1SD, England
    Acta Crystallogr D Biol Crystallogr 60:2256-68. 2004
  9. ncbi request reprint Deposition of macromolecular structures
    P A Keller
    Macromolecular Structure Database Group, EMBL Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD
    Acta Crystallogr D Biol Crystallogr 54:1105-8. 1998
  10. pmc E-MSD: the European Bioinformatics Institute Macromolecular Structure Database
    H Boutselakis
    EMBL Outstation, The European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 31:458-62. 2003

Collaborators

  • P A Keller
  • G J Barton
  • M Senger
  • S Sen
  • R Apweiler
  • T J Oldfield
  • Gerard J Kleywegt
  • L Banci
  • D Blow
  • I Bertini
  • S Velankar
  • A Golovin
  • R Newman
  • W Vranken
  • M Tagari
  • E Krissinel
  • A Pajon
  • A Suarez-Uruena
  • D Dimitropoulos
  • M John
  • J Tate
  • A Naim
  • A Hussain
  • A Rachedi
  • J Fillon
  • S Sobhany
  • P McNeil
  • H Boutselakis
  • Adel Golovin
  • J Swaminathan
  • S Albeck
  • R Lopez
  • G J Swaminathan
  • S Pillai
  • S Tromm
  • J Pineda
  • A Sitnov
  • J Copeland
  • N Cobley
  • W F Vranken
  • A W Sousa Da Silva
  • B Beuth
  • G Van Ginkel
  • R Slowley
  • G Sahni
  • C Best
  • M Hirshberg
  • J Pineda-Castillo
  • C H Boutselakis
  • E B Krissinel
  • C J Penkett
  • S X Cohen
  • R M Esnouf
  • J M Thornton
  • C Felder
  • L Carter
  • T Oinn
  • R A Laskowski
  • A Kapopoulou
  • M Ben Jelloul
  • J C Thierry
  • T Mochel
  • T Laurent
  • G Whamond
  • I M Berry
  • F Ferron
  • R J Morris
  • C Cambillau
  • J D Thompson
  • J M Diprose
  • J D Watson
  • B Canard
  • F Guillemot
  • A Rosato
  • C Andreini
  • I Silman
  • S Longhi
  • T Unger
  • R Hamer
  • C Luchinat
  • O Dym
  • R Ripp
  • H Malet
  • J Prilusky
  • A Perrakis
  • O Poch
  • Y Peleg
  • L Moulinier
  • J L Sussman
  • D I Stuart

Detail Information

Publications12

  1. pmc E-MSD: an integrated data resource for bioinformatics
    S Velankar
    Macromolecular Structure Database Group E MSD, EMBL Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 33:D262-5. 2005
    ..This work was carried out under the 'Structure Integration with Function, Taxonomy and Sequences (SIFTS)' initiative (http://www.ebi.ac.uk/msd-srv/docs/sifts) in the MSD group...
  2. pmc MSDmotif: exploring protein sites and motifs
    Adel Golovin
    EMBL Outstation, The European Bioinformatics Institute, Welcome Trust Genome Campus, Hinxton, Cambridge, UK
    BMC Bioinformatics 9:312. 2008
    ..The Protein Data Bank (PDB) is the source of this information however present search tools have limited 3D options to integrate protein sequence with its 3D structure...
  3. ncbi request reprint EMDep: a web-based system for the deposition and validation of high-resolution electron microscopy macromolecular structural information
    K Henrick
    EMBL Outstation, The European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    J Struct Biol 144:228-37. 2003
    ..The system takes full advantage of the knowledge and expertise of the experimenters, rather than relying on the database curators, for the complete and accurate description of the structural experiment and its results...
  4. pmc PDBe: Protein Data Bank in Europe
    S Velankar
    Protein Databank in Europe, EMBL EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 38:D308-17. 2010
    ..PDBe's active involvement with the X-ray crystallography, Nuclear Magnetic Resonance spectroscopy and cryo-Electron Microscopy communities have resulted in improved tools for structure deposition and analysis...
  5. pmc E-MSD: improving data deposition and structure quality
    M Tagari
    Macromolecular Structure Database, EMBL Outstation, European Bioinformatics Institute Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 34:D287-90. 2006
    ..Through this and related projects in the NMR and EM realms the MSD continues to improve the quality of publicly available structural data...
  6. pmc E-MSD: an integrated data resource for bioinformatics
    A Golovin
    EMBL Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 32:D211-6. 2004
    ..Examples showcasing the functionality and power of these tools are available from tutorial webpages (http://www. ebi.ac.uk/msd-srv/docs/roadshow_tutorial/)...
  7. pmc SOAP-based services provided by the European Bioinformatics Institute
    S Pillai
    European Bioinformatics Institute Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 33:W25-8. 2005
    ..Harte, V. Silventoinen, E. Quevillon, S. Robinson, K. Kallio, X. Fustero, P. Patel, P. Jokinen and R. Lopez (2004) Nucleic Acids Res., 32, 3-9]. These services are available free to all users from http://www.ebi.ac.uk/Tools/webservices...
  8. ncbi request reprint Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
    E Krissinel
    European Bioinformatics Institute, Genome Campus, Hinxton, Cambridge CB10 1SD, England
    Acta Crystallogr D Biol Crystallogr 60:2256-68. 2004
    ..A new score, balancing the r.m.s.d. and alignment length Nalign, is proposed. It is found that different servers agree reasonably well on the new score, while showing considerable differences in r.m.s.d. and Nalign...
  9. ncbi request reprint Deposition of macromolecular structures
    P A Keller
    Macromolecular Structure Database Group, EMBL Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD
    Acta Crystallogr D Biol Crystallogr 54:1105-8. 1998
    ..The additional information will allow improved validation procedures to be applied to the structures, and the data to be made more useful to the wider scientific community...
  10. pmc E-MSD: the European Bioinformatics Institute Macromolecular Structure Database
    H Boutselakis
    EMBL Outstation, The European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 31:458-62. 2003
    ..A generic search interface is available, coupled with a fast secondary structure domain search tool...
  11. ncbi request reprint SPINE bioinformatics and data-management aspects of high-throughput structural biology
    S Albeck
    The Israel Proteomics Center, The Department of Structural Biology, The Weizmann Institute of Science, Rehovot, Israel
    Acta Crystallogr D Biol Crystallogr 62:1184-95. 2006
    ....
  12. ncbi request reprint Comparison of backbone structures of glucose isomerase from Streptomyces and Arthrobacter
    K Henrick
    Blackett Laboratory, Imperial College, London, UK
    Protein Eng 1:467-9. 1987
    ..There is a close structural homology throughout the whole molecule, which is most accurate up to position 325. The r.m.s. displacement for 315 homologous C alpha positions up to this position is 0.92 A...