Janna Hastings

Summary

Affiliation: Wellcome Trust Genome Campus
Country: UK

Publications

  1. ncbi The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013
    Janna Hastings
    Department of Cheminformatics and Metabolism, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK
    Nucleic Acids Res 41:D456-63. 2013
  2. ncbi Ontologies for human behavior analysis and their application to clinical data
    Janna Hastings
    Swiss Center for Affective Sciences, University of Geneva, Geneva, Switzerland
    Int Rev Neurobiol 103:89-107. 2012
  3. ncbi Accessing and using chemical property databases
    Janna Hastings
    European Bioinformatics Institute, Hinxton, UK
    Methods Mol Biol 929:193-219. 2012
  4. ncbi Unintended consequences of existential quantifications in biomedical ontologies
    Martin Boeker
    Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, Freiburg, Germany
    BMC Bioinformatics 12:456. 2011
  5. ncbi Structure-based classification and ontology in chemistry
    Janna Hastings
    Cheminformatics and Metabolism, European Bioinformatics Institute, Hinxton, UK
    J Cheminform 4:8. 2012
  6. ncbi The chemical information ontology: provenance and disambiguation for chemical data on the biological semantic web
    Janna Hastings
    Chemoinformatics and Metabolism, European Bioinformatics Institute, Hinxton, United Kingdom
    PLoS ONE 6:e25513. 2011
  7. ncbi Chemical Entities of Biological Interest: an update
    Paula de Matos
    Chemoinformatics and Metabolism Team, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 38:D249-54. 2010
  8. ncbi ChEBI: an open bioinformatics and cheminformatics resource
    Kirill Degtyarenko
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom
    Curr Protoc Bioinformatics . 2009
  9. ncbi The MetaboLights repository: curation challenges in metabolomics
    Reza M Salek
    Wellcome Trust Genome Campus, European Bioinformatics Institute, Cheminformatics and Metabolism, Hinxton, Cambridgeshire, CB10 1SD, UK
    Database (Oxford) 2013:bat029. 2013
  10. ncbi MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data
    Kenneth Haug
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK
    Nucleic Acids Res 41:D781-6. 2013

Collaborators

Detail Information

Publications12

  1. ncbi The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013
    Janna Hastings
    Department of Cheminformatics and Metabolism, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK
    Nucleic Acids Res 41:D456-63. 2013
    ..Finally, our website and web services have had several enhancements, most notably the provision of a dynamic new interactive graph-based ontology visualization...
  2. ncbi Ontologies for human behavior analysis and their application to clinical data
    Janna Hastings
    Swiss Center for Affective Sciences, University of Geneva, Geneva, Switzerland
    Int Rev Neurobiol 103:89-107. 2012
    ..We focus on the benefits of ontologies for clinical data management and for facilitating translational research for the development of novel therapeutics to treat challenging and debilitating conditions...
  3. ncbi Accessing and using chemical property databases
    Janna Hastings
    European Bioinformatics Institute, Hinxton, UK
    Methods Mol Biol 929:193-219. 2012
    ....
  4. ncbi Unintended consequences of existential quantifications in biomedical ontologies
    Martin Boeker
    Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, Freiburg, Germany
    BMC Bioinformatics 12:456. 2011
    ..Based on the interpretations underlying OWL description logics (OWL-DL) semantics, we scrutinize the OWL-DL releases of OBO ontologies to assess whether their logical axioms correspond to the meaning intended by their authors...
  5. ncbi Structure-based classification and ontology in chemistry
    Janna Hastings
    Cheminformatics and Metabolism, European Bioinformatics Institute, Hinxton, UK
    J Cheminform 4:8. 2012
    ..abstract:..
  6. ncbi The chemical information ontology: provenance and disambiguation for chemical data on the biological semantic web
    Janna Hastings
    Chemoinformatics and Metabolism, European Bioinformatics Institute, Hinxton, United Kingdom
    PLoS ONE 6:e25513. 2011
    ..The Chemical Information Ontology is being developed as an open collaborative project. More details, together with a downloadable OWL file, are available at http://code.google.com/p/semanticchemistry/ (license: CC-BY-SA)...
  7. ncbi Chemical Entities of Biological Interest: an update
    Paula de Matos
    Chemoinformatics and Metabolism Team, European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 38:D249-54. 2010
    ....
  8. ncbi ChEBI: an open bioinformatics and cheminformatics resource
    Kirill Degtyarenko
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom
    Curr Protoc Bioinformatics . 2009
    ..This unit provides a detailed guide to browsing, searching, downloading, and programmatic access to the ChEBI database...
  9. ncbi The MetaboLights repository: curation challenges in metabolomics
    Reza M Salek
    Wellcome Trust Genome Campus, European Bioinformatics Institute, Cheminformatics and Metabolism, Hinxton, Cambridgeshire, CB10 1SD, UK
    Database (Oxford) 2013:bat029. 2013
    ..Here, we describe the MetaboLights curation pipeline, its challenges and its practical application in quality control of complex data depositions. Database URL: http://www.ebi.ac.uk/metabolights...
  10. ncbi MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data
    Kenneth Haug
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK
    Nucleic Acids Res 41:D781-6. 2013
    ..Eight hundred twenty-seven of the metabolites identified in these studies have been mapped to ChEBI. These studies cover a variety of techniques, including NMR spectroscopy and mass spectrometry...
  11. ncbi A database for chemical proteomics: ChEBI
    Paula de Matos
    European Bioinformatics Institute, Hinxton, UK
    Methods Mol Biol 803:273-96. 2012
    ..The ChEBI database also provides a central reference point in which to access a variety of bioinformatics data points such as pathways and their biochemical reactions; expression data; protein sequence and structures...
  12. ncbi ChEBI: a database and ontology for chemical entities of biological interest
    Kirill Degtyarenko
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Nucleic Acids Res 36:D344-50. 2008
    ..ChEBI includes an ontological classification, whereby the relationships between molecular entities or classes of entities and their parents and/or children are specified. ChEBI is available online at http://www.ebi.ac.uk/chebi/..