Guy R Cochrane

Summary

Affiliation: Wellcome Trust Genome Campus
Country: UK

Publications

  1. pmc The future of DNA sequence archiving
    Guy Cochrane
    EMBL Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, United Kingdom
    Gigascience 1:2. 2012
  2. pmc Facing growth in the European Nucleotide Archive
    Guy Cochrane
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 41:D30-5. 2013
  3. pmc EMBL Nucleotide Sequence Database: developments in 2005
    Guy Cochrane
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
    Nucleic Acids Res 34:D10-5. 2006
  4. ncbi request reprint Evidence standards in experimental and inferential INSDC Third Party Annotation data
    Guy Cochrane
    EMBL Nucleotide Sequence Database, EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom
    OMICS 10:105-13. 2006
  5. pmc Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database
    Guy Cochrane
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Nucleic Acids Res 36:D5-12. 2008
  6. pmc Petabyte-scale innovations at the European Nucleotide Archive
    Guy Cochrane
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 37:D19-25. 2009
  7. pmc The 2010 Nucleic Acids Research Database Issue and online Database Collection: a community of data resources
    Guy R Cochrane
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 38:D1-4. 2010
  8. pmc The International Nucleotide Sequence Database Collaboration
    Guy Cochrane
    EMBL, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 39:D15-8. 2011

Detail Information

Publications8

  1. pmc The future of DNA sequence archiving
    Guy Cochrane
    EMBL Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, United Kingdom
    Gigascience 1:2. 2012
    ..Here, we propose a graded system in which the ease of reproduction of a sequencing-based experiment and the relative availability of a sample for resequencing define the level of lossy compression applied to stored data...
  2. pmc Facing growth in the European Nucleotide Archive
    Guy Cochrane
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 41:D30-5. 2013
    ..Second, we detail our plans for the deployment of CRAM data compression technology in ENA...
  3. pmc EMBL Nucleotide Sequence Database: developments in 2005
    Guy Cochrane
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
    Nucleic Acids Res 34:D10-5. 2006
    ..New developments, the submission process, data retrieval and access to support are presented in this paper, along with links to sources of further information...
  4. ncbi request reprint Evidence standards in experimental and inferential INSDC Third Party Annotation data
    Guy Cochrane
    EMBL Nucleotide Sequence Database, EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom
    OMICS 10:105-13. 2006
    ..The data are divided into two tiers: those with experimental evidence and those with inferential evidence. Standards for TPA are detailed and illustrated with the aid of case studies...
  5. pmc Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database
    Guy Cochrane
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Nucleic Acids Res 36:D5-12. 2008
    ..Priorities are discussed in terms of how reliably information can be captured, the long-term benefits of its capture and the ease with which it can be captured...
  6. pmc Petabyte-scale innovations at the European Nucleotide Archive
    Guy Cochrane
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 37:D19-25. 2009
    ....
  7. pmc The 2010 Nucleic Acids Research Database Issue and online Database Collection: a community of data resources
    Guy R Cochrane
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 38:D1-4. 2010
    ..The full content of the Database Issue is available online at the Nucleic Acids Research web site (http://nar.oxfordjournals.org/)...
  8. pmc The International Nucleotide Sequence Database Collaboration
    Guy Cochrane
    EMBL, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 39:D15-8. 2011
    ..In this article, we introduce the INSDC, outline data growth patterns and comment on the challenges of increased growth...