- Array-based genotyping in S.cerevisiae using semi-supervised clusteringRichard Bourgon
EMBL, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
Bioinformatics 25:1056-62. 2009..As a result, supervised classifiers trained on reference strains may not generalize well to diverged strains; ssG's semi-supervised approach, on the other hand, adapts automatically...
- SpeCond: a method to detect condition-specific gene expressionFlorence M G Cavalli
EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SD, UK
Genome Biol 12:R101. 2011..An implementation of SpeCond is freely available as a Bioconductor package at http://www.bioconductor.org/packages/release/bioc/html/SpeCond.html...
- Independent filtering increases detection power for high-throughput experimentsRichard Bourgon
European Bioinformatics Institute, Cambridge CB10 1SD, UK
Proc Natl Acad Sci U S A 107:9546-51. 2010..Independent filtering-using filter/test pairs that are independent under the null hypothesis but correlated under the alternative-is a general approach that can substantially increase the efficiency of experiments...