R Satija

Summary

Affiliation: University of Oxford
Country: UK

Publications

  1. doi request reprint Combining statistical alignment and phylogenetic footprinting to detect regulatory elements
    Rahul Satija
    Department of Statistics, Oxford University, Oxford, UK
    Bioinformatics 24:1236-42. 2008
  2. pmc BigFoot: Bayesian alignment and phylogenetic footprinting with MCMC
    Rahul Satija
    Department of Statistics, University of Oxford, 1 South Parks Road, OX1 3TG Oxford, UK
    BMC Evol Biol 9:217. 2009
  3. doi request reprint Genome-wide functional element detection using pairwise statistical alignment outperforms multiple genome footprinting techniques
    R Satija
    Department of Statistics, Oxford University, Oxford, UK
    Bioinformatics 26:2116-20. 2010
  4. pmc The genome of the sea urchin Strongylocentrotus purpuratus
    Erica Sodergren
    Science 314:941-52. 2006

Collaborators

Detail Information

Publications4

  1. doi request reprint Combining statistical alignment and phylogenetic footprinting to detect regulatory elements
    Rahul Satija
    Department of Statistics, Oxford University, Oxford, UK
    Bioinformatics 24:1236-42. 2008
    ..Alternatively, statistical alignment methods provide a framework for performing phylogenetic analyses by examining a distribution of alignments...
  2. pmc BigFoot: Bayesian alignment and phylogenetic footprinting with MCMC
    Rahul Satija
    Department of Statistics, University of Oxford, 1 South Parks Road, OX1 3TG Oxford, UK
    BMC Evol Biol 9:217. 2009
    ..Our method utilized standard dynamic programming hidden markov model algorithms to analyze up to four sequences...
  3. doi request reprint Genome-wide functional element detection using pairwise statistical alignment outperforms multiple genome footprinting techniques
    R Satija
    Department of Statistics, Oxford University, Oxford, UK
    Bioinformatics 26:2116-20. 2010
    ..While phastCons can analyze many genomes simultaneously, it ignores potentially informative insertion and deletion events and relies on a fixed, precomputed multiple sequence alignment...
  4. pmc The genome of the sea urchin Strongylocentrotus purpuratus
    Erica Sodergren
    Science 314:941-52. 2006
    ..This echinoderm genome provides an evolutionary outgroup for the chordates and yields insights into the evolution of deuterostomes...