Fredrik Pettersson

Summary

Affiliation: University of Oxford
Country: UK

Publications

  1. pmc A comparison of case-only designs for detecting gene x gene interaction in rheumatoid arthritis using genome-wide case-control data in Genetic Analysis Workshop 16
    Geraldine M Clarke
    Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford, OX3 7BN, UK
    BMC Proc 3:S73. 2009
  2. pmc Variability of gene expression profiles in human blood and lymphoblastoid cell lines
    Josine L Min
    Genetic and Genomic Epidemiology Unit, Wellcome Trust Centre for Human Genetics, Oxford, UK
    BMC Genomics 11:96. 2010
  3. pmc Goldsurfer2 (Gs2): a comprehensive tool for the analysis and visualization of genome wide association studies
    Fredrik Pettersson
    Dept Bioinformatics, Wellcome Trust Centre, Oxford, UK
    BMC Bioinformatics 9:138. 2008
  4. pmc Marker selection for genetic case-control association studies
    Fredrik H Pettersson
    Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK
    Nat Protoc 4:743-52. 2009
  5. pmc POPE--a tool to aid high-throughput phylogenetic analysis
    Thorhildur Juliusdottir
    Wellcome Trust Centre for Human Genetics, Roosevelt Drive, Oxford, OX3 7BN, UK
    Bioinformatics 24:2778-9. 2008
  6. ncbi request reprint GOLDsurfer: three dimensional display of linkage disequilibrium
    Fredrik Pettersson
    Department of Organic Chemistry, Umea University, Sweden
    Bioinformatics 20:3241-3. 2004
  7. pmc Sequence signature analysis of chromosome identity in three Drosophila species
    Per Stenberg
    UCMP, Umea University, Umea, Sweden
    BMC Bioinformatics 6:158. 2005

Collaborators

Detail Information

Publications7

  1. pmc A comparison of case-only designs for detecting gene x gene interaction in rheumatoid arthritis using genome-wide case-control data in Genetic Analysis Workshop 16
    Geraldine M Clarke
    Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford, OX3 7BN, UK
    BMC Proc 3:S73. 2009
    ..Porportional odds and multinomial methods provide new tools for identification of G x G interactions...
  2. pmc Variability of gene expression profiles in human blood and lymphoblastoid cell lines
    Josine L Min
    Genetic and Genomic Epidemiology Unit, Wellcome Trust Centre for Human Genetics, Oxford, UK
    BMC Genomics 11:96. 2010
    ....
  3. pmc Goldsurfer2 (Gs2): a comprehensive tool for the analysis and visualization of genome wide association studies
    Fredrik Pettersson
    Dept Bioinformatics, Wellcome Trust Centre, Oxford, UK
    BMC Bioinformatics 9:138. 2008
    ..Finally significant associations need to be prioritised using functional and biological interpretation methods, browsing available biological annotation, pathway information and patterns of linkage disequilibrium (LD)...
  4. pmc Marker selection for genetic case-control association studies
    Fredrik H Pettersson
    Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK
    Nat Protoc 4:743-52. 2009
    ..Publicly available web-based resources are utilized to browse and retrieve data, and software, such as Haploview and Goldsurfer2, is applied to investigate LD and to select tagSNPs...
  5. pmc POPE--a tool to aid high-throughput phylogenetic analysis
    Thorhildur Juliusdottir
    Wellcome Trust Centre for Human Genetics, Roosevelt Drive, Oxford, OX3 7BN, UK
    Bioinformatics 24:2778-9. 2008
    ..AVAILABILITY: POPE is available for download from the website: http://www.well.ox.ac.uk/~tota/pope...
  6. ncbi request reprint GOLDsurfer: three dimensional display of linkage disequilibrium
    Fredrik Pettersson
    Department of Organic Chemistry, Umea University, Sweden
    Bioinformatics 20:3241-3. 2004
    ..Simultaneous presentation of LD measures, including recombination rate estimates and disease association statistics, helps to clarify LD patterns and facilitates interpretations based on multiple indices of local genetic data...
  7. pmc Sequence signature analysis of chromosome identity in three Drosophila species
    Per Stenberg
    UCMP, Umea University, Umea, Sweden
    BMC Bioinformatics 6:158. 2005
    ..Here, we present a new, unbiased, exhaustive computational method that was used to probe three Drosophila genomes for chromosome-specific sequences...