Irmtraud M Meyer

Summary

Affiliation: University of Oxford
Country: UK

Publications

  1. ncbi Statistical evidence for conserved, local secondary structure in the coding regions of eukaryotic mRNAs and pre-mRNAs
    Irmtraud M Meyer
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SD, UK
    Nucleic Acids Res 33:6338-48. 2005
  2. ncbi Gene structure conservation aids similarity based gene prediction
    Irmtraud M Meyer
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK
    Nucleic Acids Res 32:776-83. 2004
  3. ncbi Co-transcriptional folding is encoded within RNA genes
    Irmtraud M Meyer
    University of Oxford, Oxford OX1 3QB, UK
    BMC Mol Biol 5:10. 2004
  4. ncbi Comparative ab initio prediction of gene structures using pair HMMs
    Irmtraud M Meyer
    The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK
    Bioinformatics 18:1309-18. 2002
  5. ncbi Moments of the Boltzmann distribution for RNA secondary structures
    István Miklós
    MTA ELTE Theoretical Biology and Ecology Modelling Group, H 1117 Budapest, Pazmany Peter setany 1 C, Hungary
    Bull Math Biol 67:1031-47. 2005
  6. ncbi SimulFold: simultaneously inferring RNA structures including pseudoknots, alignments, and trees using a Bayesian MCMC framework
    Irmtraud M Meyer
    UBC Bioinformatics Centre, University of British Columbia, Vancouver, British Columbia, Canada
    PLoS Comput Biol 3:e149. 2007
  7. ncbi A linear memory algorithm for Baum-Welch training
    István Miklós
    MTA ELTE Theoretical Biology and Ecology Group, Pázmány Péter sétány 1 c 1117 Budapest, Hungary
    BMC Bioinformatics 6:231. 2005
  8. ncbi A practical guide to the art of RNA gene prediction
    Irmtraud M Meyer
    Bioinformatics Centre and Department of Computer Science, University of British Columbia, 2366 Main Mall, Vancouver, BC, Canada V6T 1Z4
    Brief Bioinform 8:396-414. 2007
  9. ncbi A cross-species comparison of X-chromosome inactivation in Eutheria
    Ziny C Yen
    Department of Medical Genetics, University of British Columbia, Vancouver, BC, Canada
    Genomics 90:453-63. 2007
  10. ncbi Predicting novel RNA-RNA interactions
    Irmtraud M Meyer
    UBC Bioinformatics Centre and Department of Medical Genetics, University of British Columbia, 2185 East Mall, Vancouver, BC, Canada V6T 1Z4
    Curr Opin Struct Biol 18:387-93. 2008

Collaborators

Detail Information

Publications10

  1. ncbi Statistical evidence for conserved, local secondary structure in the coding regions of eukaryotic mRNAs and pre-mRNAs
    Irmtraud M Meyer
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SD, UK
    Nucleic Acids Res 33:6338-48. 2005
    ....
  2. ncbi Gene structure conservation aids similarity based gene prediction
    Irmtraud M Meyer
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK
    Nucleic Acids Res 32:776-83. 2004
    ..It is more accurate than Genewise for genes whose proteins are <80% identical, and is suitable for use in a combined gene prediction system where other methods identify well conserved and non-conserved genes, and pseudogenes...
  3. ncbi Co-transcriptional folding is encoded within RNA genes
    Irmtraud M Meyer
    University of Oxford, Oxford OX1 3QB, UK
    BMC Mol Biol 5:10. 2004
    ..Dedicated experiments with individual RNA molecules have shown that RNA folds while it is being transcribed and that its correct folding can also depend on the proper speed of transcription...
  4. ncbi Comparative ab initio prediction of gene structures using pair HMMs
    Irmtraud M Meyer
    The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK
    Bioinformatics 18:1309-18. 2002
    ..More information can be found at: http://www.sanger.ac.uk/Software/analysis/doublescan/..
  5. ncbi Moments of the Boltzmann distribution for RNA secondary structures
    István Miklós
    MTA ELTE Theoretical Biology and Ecology Modelling Group, H 1117 Budapest, Pazmany Peter setany 1 C, Hungary
    Bull Math Biol 67:1031-47. 2005
    ..These results suggest that biologically functional RNA sequences not only require a thermodynamically stable minimum free energy structure, but also an ensemble of structures whose free energies are close to the minimum free energy...
  6. ncbi SimulFold: simultaneously inferring RNA structures including pseudoknots, alignments, and trees using a Bayesian MCMC framework
    Irmtraud M Meyer
    UBC Bioinformatics Centre, University of British Columbia, Vancouver, British Columbia, Canada
    PLoS Comput Biol 3:e149. 2007
    ..It is thus likely to have a strong impact, both on the field of RNA structure prediction and on a wide range of data analyses...
  7. ncbi A linear memory algorithm for Baum-Welch training
    István Miklós
    MTA ELTE Theoretical Biology and Ecology Group, Pázmány Péter sétány 1 c 1117 Budapest, Hungary
    BMC Bioinformatics 6:231. 2005
    ..This has so far effectively prevented the automatic parameter training of hidden Markov models that are currently used for biological sequence analyses...
  8. ncbi A practical guide to the art of RNA gene prediction
    Irmtraud M Meyer
    Bioinformatics Centre and Department of Computer Science, University of British Columbia, 2366 Main Mall, Vancouver, BC, Canada V6T 1Z4
    Brief Bioinform 8:396-414. 2007
    ..It discusses our current view of RNA genes as well as recent computational analyses of RNA genes and concludes with an outlook to future directions in algorithm development and data analyses...
  9. ncbi A cross-species comparison of X-chromosome inactivation in Eutheria
    Ziny C Yen
    Department of Medical Genetics, University of British Columbia, Vancouver, BC, Canada
    Genomics 90:453-63. 2007
    ....
  10. ncbi Predicting novel RNA-RNA interactions
    Irmtraud M Meyer
    UBC Bioinformatics Centre and Department of Medical Genetics, University of British Columbia, 2185 East Mall, Vancouver, BC, Canada V6T 1Z4
    Curr Opin Struct Biol 18:387-93. 2008
    ..We conclude by discussing the merits of the different approaches and provide an outlook on probably and desirable future developments in the field...