Russell L Marsden

Summary

Affiliation: University College London
Country: UK

Publications

  1. pmc Comprehensive genome analysis of 203 genomes provides structural genomics with new insights into protein family space
    Russell L Marsden
    Department of Biochemistry and Molecular Biology, University College London, Gower Street, London WC1E 6BT, UK
    Nucleic Acids Res 34:1066-80. 2006
  2. pmc Exploiting protein structure data to explore the evolution of protein function and biological complexity
    Russell L Marsden
    Department of Biochemistry, University College London Gower Street, London WC1E 6BT, UK
    Philos Trans R Soc Lond B Biol Sci 361:425-40. 2006
  3. pmc Towards a comprehensive structural coverage of completed genomes: a structural genomics viewpoint
    Russell L Marsden
    Department of Biochemistry and Molecular Biology, University College London, Gower Street, London WC1E 6BT, UK
    BMC Bioinformatics 8:86. 2007
  4. ncbi request reprint Progress of structural genomics initiatives: an analysis of solved target structures
    Annabel E Todd
    Department of Biochemistry and Molecular Biology, University College London, Gower Street, London, WC1E 6BT, UK
    J Mol Biol 348:1235-60. 2005
  5. ncbi request reprint A practical and robust sequence search strategy for structural genomics target selection
    James E Bray
    Biomolecular Structure and Modelling Unit, Department of Biochemistry and Molecular Biology, University College London, Gower Street, London, WC1E 6BT, UK
    Bioinformatics 20:2288-95. 2004
  6. pmc Protein structure prediction servers at University College London
    Kevin Bryson
    Department of Computer Science, University College London Gower Street, London WC1E 6BT, UK
    Nucleic Acids Res 33:W36-8. 2005
  7. doi request reprint Target selection for structural genomics: an overview
    Russell L Marsden
    Biochemistry and Molecular Biology Department, University College London, London, UK
    Methods Mol Biol 426:3-25. 2008
  8. ncbi request reprint Identification and distribution of protein families in 120 completed genomes using Gene3D
    David Lee
    Biomolecular Structure and Modelling Group, Department of Biochemistry, University College London, Gower Street, London
    Proteins 59:603-15. 2005
  9. pmc Rapid protein domain assignment from amino acid sequence using predicted secondary structure
    Russell L Marsden
    Bioinformatics Unit, Department of Computer Science, University College London, UK
    Protein Sci 11:2814-24. 2002
  10. doi request reprint The classification of protein domains
    Russell L Marsden
    Biochemistry and Molecular Biology Department, University College London, London, United Kingdom
    Methods Mol Biol 453:123-46. 2008

Detail Information

Publications10

  1. pmc Comprehensive genome analysis of 203 genomes provides structural genomics with new insights into protein family space
    Russell L Marsden
    Department of Biochemistry and Molecular Biology, University College London, Gower Street, London WC1E 6BT, UK
    Nucleic Acids Res 34:1066-80. 2006
    ..However, in large families, additional structures should be determined as these would reveal more about the evolution of the family and enable a greater understanding of how function evolves...
  2. pmc Exploiting protein structure data to explore the evolution of protein function and biological complexity
    Russell L Marsden
    Department of Biochemistry, University College London Gower Street, London WC1E 6BT, UK
    Philos Trans R Soc Lond B Biol Sci 361:425-40. 2006
    ....
  3. pmc Towards a comprehensive structural coverage of completed genomes: a structural genomics viewpoint
    Russell L Marsden
    Department of Biochemistry and Molecular Biology, University College London, Gower Street, London WC1E 6BT, UK
    BMC Bioinformatics 8:86. 2007
    ..It is therefore of considerable interest to gain insights into the number and distribution of these families, and what efforts may be required to achieve a comprehensive structural coverage across all protein families...
  4. ncbi request reprint Progress of structural genomics initiatives: an analysis of solved target structures
    Annabel E Todd
    Department of Biochemistry and Molecular Biology, University College London, Gower Street, London, WC1E 6BT, UK
    J Mol Biol 348:1235-60. 2005
    ..From the perspective of this analysis, it appears that structural genomics is on track to be a success, and it is hoped that this work will inform future directions of the field...
  5. ncbi request reprint A practical and robust sequence search strategy for structural genomics target selection
    James E Bray
    Biomolecular Structure and Modelling Unit, Department of Biochemistry and Molecular Biology, University College London, Gower Street, London, WC1E 6BT, UK
    Bioinformatics 20:2288-95. 2004
    ..With the rapid development of protein comparison software a robust prioritization scheme should be independent of the choice of algorithm and be able to incorporate different sequence similarity thresholds...
  6. pmc Protein structure prediction servers at University College London
    Kevin Bryson
    Department of Computer Science, University College London Gower Street, London WC1E 6BT, UK
    Nucleic Acids Res 33:W36-8. 2005
    ..More recent servers include DISOPRED for the prediction of protein dynamic disorder and DomPred for domain boundary prediction. These servers are available from our software home page at http://bioinf.cs.ucl.ac.uk/software.html...
  7. doi request reprint Target selection for structural genomics: an overview
    Russell L Marsden
    Biochemistry and Molecular Biology Department, University College London, London, UK
    Methods Mol Biol 426:3-25. 2008
    ....
  8. ncbi request reprint Identification and distribution of protein families in 120 completed genomes using Gene3D
    David Lee
    Biomolecular Structure and Modelling Group, Department of Biochemistry, University College London, Gower Street, London
    Proteins 59:603-15. 2005
    ..Functional data (e.g. COG/KEGG/GO) integrated within Gene3D result in a comprehensive resource that is currently being used in structure genomics initiatives and can be accessed via http://www.biochem.ucl.ac.uk/bsm/cath/Gene3D/...
  9. pmc Rapid protein domain assignment from amino acid sequence using predicted secondary structure
    Russell L Marsden
    Bioinformatics Unit, Department of Computer Science, University College London, UK
    Protein Sci 11:2814-24. 2002
    ..These results have been put into context in relation to the results obtained from the other prediction methods assessed...
  10. doi request reprint The classification of protein domains
    Russell L Marsden
    Biochemistry and Molecular Biology Department, University College London, London, United Kingdom
    Methods Mol Biol 453:123-46. 2008
    ....