Peter Li

Summary

Affiliation: University of Manchester
Country: UK

Publications

  1. pmc myExperiment: a repository and social network for the sharing of bioinformatics workflows
    Carole A Goble
    School of Computer Science, The University of Manchester, Manchester M13 9PL, UK
    Nucleic Acids Res 38:W677-82. 2010
  2. pmc Systematic integration of experimental data and models in systems biology
    Peter Li
    School of Chemistry, The University of Manchester, Manchester M13 9PL, UK
    BMC Bioinformatics 11:582. 2010
  3. pmc Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data
    Peter Li
    Manchester Centre for Integrative Systems Biology and School of Chemistry, Manchester Interdisciplinary Biocentre, University of Manchester, 131 Princess St, Manchester, M1 7DN, UK
    BMC Bioinformatics 9:334. 2008
  4. ncbi request reprint Automated manipulation of systems biology models using libSBML within Taverna workflows
    Peter Li
    School of Chemistry and Manchester Centre for Integrative Systems Biology, Manchester Interdisciplinary Biocentre, University of Manchester, UK
    Bioinformatics 24:287-9. 2008
  5. pmc Taverna: a tool for building and running workflows of services
    Duncan Hull
    School of Computer Science, University of Manchester, M13 9PL, UK
    Nucleic Acids Res 34:W729-32. 2006
  6. pmc Growth control of the eukaryote cell: a systems biology study in yeast
    Juan I Castrillo
    Faculty of Life Sciences, Michael Smith Building, University of Manchester, Oxford Road, Manchester M13 9PT, UK
    J Biol 6:4. 2007
  7. ncbi request reprint Bridging the gap between in silico and cell-based analysis of the nuclear factor-kappaB signaling pathway by in vitro studies of IKK2
    Adaoha E C Ihekwaba
    School of Chemistry, The University of Manchester, Faraday Building, UK
    FEBS J 274:1678-90. 2007
  8. ncbi request reprint An efficient and high-throughput approach for experimental validation of novel human gene predictions
    Pius M Brzoska
    Applied Biosystems, 850 Lincoln Center Drive, Foster City, CA 94404, USA
    Genomics 87:437-45. 2006
  9. ncbi request reprint Biosphere: the interoperation of web services in microarray cluster analysis
    Kei Hoi Cheung
    Center for Medical Informatics, Yale University, 300 George Street, New Haven, CT 06511, USA
    Appl Bioinformatics 3:253-6. 2004
  10. ncbi request reprint Taverna: a tool for the composition and enactment of bioinformatics workflows
    Tom Oinn
    EMBL European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK
    Bioinformatics 20:3045-54. 2004

Collaborators

Detail Information

Publications13

  1. pmc myExperiment: a repository and social network for the sharing of bioinformatics workflows
    Carole A Goble
    School of Computer Science, The University of Manchester, Manchester M13 9PL, UK
    Nucleic Acids Res 38:W677-82. 2010
    ..Further documentation about myExperiment including its REST web service is available from http://wiki.myexperiment.org. Feedback and requests for support can be sent to bugs@myexperiment.org...
  2. pmc Systematic integration of experimental data and models in systems biology
    Peter Li
    School of Chemistry, The University of Manchester, Manchester M13 9PL, UK
    BMC Bioinformatics 11:582. 2010
    ..Automating the assembly and use of systems biology models is dependent upon data integration processes involving the interoperation of data and analytical resources...
  3. pmc Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data
    Peter Li
    Manchester Centre for Integrative Systems Biology and School of Chemistry, Manchester Interdisciplinary Biocentre, University of Manchester, 131 Princess St, Manchester, M1 7DN, UK
    BMC Bioinformatics 9:334. 2008
    ..Furthermore, this transfer of data may require a reconciliation step in order for there to be interoperability between computational tools...
  4. ncbi request reprint Automated manipulation of systems biology models using libSBML within Taverna workflows
    Peter Li
    School of Chemistry and Manchester Centre for Integrative Systems Biology, Manchester Interdisciplinary Biocentre, University of Manchester, UK
    Bioinformatics 24:287-9. 2008
    ..The ability of Taverna to invoke Java classes and methods is demonstrated by a workflow in which we use libSBML to map gene expression data onto a metabolic pathway represented as a SBML model...
  5. pmc Taverna: a tool for building and running workflows of services
    Duncan Hull
    School of Computer Science, University of Manchester, M13 9PL, UK
    Nucleic Acids Res 34:W729-32. 2006
    ..These high-level workflows can integrate many different resources into a single analysis. Taverna is available freely under the terms of the GNU Lesser General Public License (LGPL) from http://taverna.sourceforge.net/...
  6. pmc Growth control of the eukaryote cell: a systems biology study in yeast
    Juan I Castrillo
    Faculty of Life Sciences, Michael Smith Building, University of Manchester, Oxford Road, Manchester M13 9PT, UK
    J Biol 6:4. 2007
    ..Comprehensive studies at the transcriptional, proteomic and metabolic levels under defined controlled conditions are currently lacking...
  7. ncbi request reprint Bridging the gap between in silico and cell-based analysis of the nuclear factor-kappaB signaling pathway by in vitro studies of IKK2
    Adaoha E C Ihekwaba
    School of Chemistry, The University of Manchester, Faraday Building, UK
    FEBS J 274:1678-90. 2007
    ..Hence, interpretation of in silico models should be made in the context of this uncertainty...
  8. ncbi request reprint An efficient and high-throughput approach for experimental validation of novel human gene predictions
    Pius M Brzoska
    Applied Biosystems, 850 Lincoln Center Drive, Foster City, CA 94404, USA
    Genomics 87:437-45. 2006
    ..Reevaluation of these transcripts produced 574 novel transcripts using RefSeq as a reference. RT-PCR sequencing in combination with RACE on ab initio gene predictions could be used to define the transcriptome across all species...
  9. ncbi request reprint Biosphere: the interoperation of web services in microarray cluster analysis
    Kei Hoi Cheung
    Center for Medical Informatics, Yale University, 300 George Street, New Haven, CT 06511, USA
    Appl Bioinformatics 3:253-6. 2004
    ....
  10. ncbi request reprint Taverna: a tool for the composition and enactment of bioinformatics workflows
    Tom Oinn
    EMBL European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK
    Bioinformatics 20:3045-54. 2004
    ..A growing number of these resources are being made available with programmatic access in the form of Web services. Bioinformatics scientists will need to orchestrate these Web services in workflows as part of their analyses...
  11. pmc Systematic identification of pseudogenes through whole genome expression evidence profiling
    Alison Yao
    Celera Genomics, 45 West Gude Dr, Rockville, MD 20850, USA
    Nucleic Acids Res 34:4477-85. 2006
    ..We have demonstrated the power of whole genome profiling of expression sequences to improve the accuracy of gene annotations...
  12. pmc Gene and alternative splicing annotation with AIR
    Liliana Florea
    Informatics Research, Applied Biosystems, Rockville, Maryland 20850, USA
    Genome Res 15:54-66. 2005
    ....
  13. pmc The Celera Discovery System
    Anthony Kerlavage
    Celera Genomics, 45 W Gudd Drive, Rockville, MD 20850, USA
    Nucleic Acids Res 30:129-36. 2002
    ..A user workspace keeps track of queries and analyses. CDS is widely used by the academic research community and requires a subscription for access. The system and academic pricing information are available at http://cds.celera.com...