Andrew R Jones

Summary

Affiliation: University of Manchester
Country: UK

Publications

  1. pmc An analysis of extensible modelling for functional genomics data
    Andrew R Jones
    School of Computer Science, University of Manchester, Manchester, UK
    BMC Bioinformatics 6:235. 2005
  2. ncbi request reprint Visualisation and analysis of proteomic data from the procyclic form of Trypanosoma brucei
    Andrew Jones
    Department of Computing Science, University of Glasgow, Glasgow, Scotland, UK
    Proteomics 6:259-67. 2006
  3. ncbi request reprint FuGE: Functional Genomics Experiment Object Model
    Andrew R Jones
    School of Computer Science, University of Manchester, Manchester, United Kingdom
    OMICS 10:179-84. 2006
  4. ncbi request reprint An update on data standards for gel electrophoresis
    Andrew R Jones
    School of Computer Science and the Faculty of Life Sciences, University of Manchester, Manchester, UK
    Proteomics 7:35-40. 2007
  5. ncbi request reprint The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics
    Andrew R Jones
    School of Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK
    Nat Biotechnol 25:1127-33. 2007
  6. doi request reprint A toolkit for capturing and sharing FuGE experiments
    Khalid Belhajjame
    School of Computer Science, University of Manchester, Oxford Road, Manchester, UK
    Bioinformatics 24:2647-9. 2008
  7. pmc FDRAnalysis: a tool for the integrated analysis of tandem mass spectrometry identification results from multiple search engines
    David C Wedge
    Faculty of Life Sciences, University of Manchester, Manchester M13 9PT, United Kingdom
    J Proteome Res 10:2088-94. 2011
  8. pmc Capture and analysis of quantitative proteomic data
    King Wai Lau
    Faculty of Life Sciences, University of Manchester, Manchester, UK
    Proteomics 7:2787-99. 2007
  9. pmc The proteome of Toxoplasma gondii: integration with the genome provides novel insights into gene expression and annotation
    Dong Xia
    Department of Pre clinical Veterinary Science, Faculty of Veterinary Science, University of Liverpool, Liverpool L69 7ZJ, UK
    Genome Biol 9:R116. 2008
  10. ncbi request reprint A strategy capitalizing on synergies: the Reporting Structure for Biological Investigation (RSBI) working group
    Susanna Assunta Sansone
    EMBL EBI, European Nutrigenomics Organisation NuGO, Hinxton, Cambridge, United Kingdom
    OMICS 10:164-71. 2006

Detail Information

Publications15

  1. pmc An analysis of extensible modelling for functional genomics data
    Andrew R Jones
    School of Computer Science, University of Manchester, Manchester, UK
    BMC Bioinformatics 6:235. 2005
    ..Extensions to data formats are important because the experimental methodologies tend to be fairly diverse and rapidly evolving, which hinders the creation of formats that will be stable over time...
  2. ncbi request reprint Visualisation and analysis of proteomic data from the procyclic form of Trypanosoma brucei
    Andrew Jones
    Department of Computing Science, University of Glasgow, Glasgow, Scotland, UK
    Proteomics 6:259-67. 2006
    ..gla.ac.uk/functionalgenomics). Using specific proteins as examples, we demonstrate how the visualisation software and the database query facilities can be used...
  3. ncbi request reprint FuGE: Functional Genomics Experiment Object Model
    Andrew R Jones
    School of Computer Science, University of Manchester, Manchester, United Kingdom
    OMICS 10:179-84. 2006
    ....
  4. ncbi request reprint An update on data standards for gel electrophoresis
    Andrew R Jones
    School of Computer Science and the Faculty of Life Sciences, University of Manchester, Manchester, UK
    Proteomics 7:35-40. 2007
    ..We present a tutorial on how such resources can be used and how the community should get involved with the on-going projects. Finally, we present a roadmap for future developments in this area...
  5. ncbi request reprint The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics
    Andrew R Jones
    School of Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK
    Nat Biotechnol 25:1127-33. 2007
    ..Such advances are important for transparent data management and mining in functional genomics and systems biology...
  6. doi request reprint A toolkit for capturing and sharing FuGE experiments
    Khalid Belhajjame
    School of Computer Science, University of Manchester, Oxford Road, Manchester, UK
    Bioinformatics 24:2647-9. 2008
    ..FuGE applications commonly include components that capture, store and search experiment descriptions, where the requirements of different applications have much in common...
  7. pmc FDRAnalysis: a tool for the integrated analysis of tandem mass spectrometry identification results from multiple search engines
    David C Wedge
    Faculty of Life Sciences, University of Manchester, Manchester M13 9PT, United Kingdom
    J Proteome Res 10:2088-94. 2011
    ....
  8. pmc Capture and analysis of quantitative proteomic data
    King Wai Lau
    Faculty of Life Sciences, University of Manchester, Manchester, UK
    Proteomics 7:2787-99. 2007
    ..These issues will be discussed, along with those relating to deposition of quantitative data. At present, mature data standards for quantitative proteomics are not yet available, although formats are beginning to emerge...
  9. pmc The proteome of Toxoplasma gondii: integration with the genome provides novel insights into gene expression and annotation
    Dong Xia
    Department of Pre clinical Veterinary Science, Faculty of Veterinary Science, University of Liverpool, Liverpool L69 7ZJ, UK
    Genome Biol 9:R116. 2008
    ....
  10. ncbi request reprint A strategy capitalizing on synergies: the Reporting Structure for Biological Investigation (RSBI) working group
    Susanna Assunta Sansone
    EMBL EBI, European Nutrigenomics Organisation NuGO, Hinxton, Cambridge, United Kingdom
    OMICS 10:164-71. 2006
    ....
  11. ncbi request reprint The HUPO pre-congress Proteomics Standards Initiative workshop. HUPO 5th annual World Congress. Long Beach, CA, USA 28 October-1 November 2006
    Sandra Orchard
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK
    Proteomics 7:1006-8. 2007
    ..This should be achieved by early in 2007...
  12. ncbi request reprint Five years of progress in the Standardization of Proteomics Data 4th Annual Spring Workshop of the HUPO-Proteomics Standards Initiative April 23-25, 2007 Ecole Nationale Supérieure (ENS), Lyon, France
    Sandra Orchard
    EMBL Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Proteomics 7:3436-40. 2007
    ..Finally the Molecular Interaction group discussed the development of a molecular interaction scoring system with accompanying gold standard data test sets...
  13. ncbi request reprint Entering the implementation era: a report on the HUPO-PSI Fall workshop 25-27 September 2006, Washington DC, USA
    Sandra Orchard
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Proteomics 7:337-9. 2007
    ..In parallel with this, minimum reporting requirement have been developed and are now maturing to the point where they have been submitted for journal publication after prolonged exposure to community-input via the PSI website...
  14. doi request reprint Guidelines for reporting the use of gel electrophoresis in proteomics
    Frank Gibson
    Nat Biotechnol 26:863-4. 2008
  15. ncbi request reprint The minimum information about a proteomics experiment (MIAPE)
    Chris F Taylor
    The HUPO Proteomics Standards Initiative, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK
    Nat Biotechnol 25:887-93. 2007
    ....