- FREAD revisited: Accurate loop structure prediction using a database search algorithmYoonjoo Choi
Department of Statistics, Oxford University, United Kingdom
Proteins 78:1431-40. 2010..In examining FREAD's ability to predict in the model environment, we found that whole structure quality did not affect the quality of loop predictions...
- Fragment-based modeling of membrane protein loops: successes, failures, and prospects for the futureSebastian Kelm
Department of Statistics, University of Oxford, Oxford, United Kingdom
Proteins 82:175-86. 2014..The current version of our proof-of-concept loop modeling protocol produces high-accuracy loop models for MPs and is available as a web server at http://medeller.info/fread...
- Predicting antibody complementarity determining region structures without classificationYoonjoo Choi
Department of Statistics, Oxford University, 1 South Parks Road, Oxford OX1 3TG, UK
Mol Biosyst 7:3327-34. 2011..ConFREAD which includes contact information successfully discriminates the bound and unbound CDR structures and achieves an accuracy of 1.35 Å for bound structures of CDR-H3...