T K Attwood

Summary

Affiliation: University of Manchester
Country: UK

Publications

  1. pmc The PRINTS database: a fine-grained protein sequence annotation and analysis resource--its status in 2012
    Teresa K Attwood
    Faculty of Life Sciences, The University of Manchester, Manchester M13 9PT, UK
    Database (Oxford) 2012:bas019. 2012
  2. pmc Low-complexity regions within protein sequences have position-dependent roles
    Alain Coletta
    Faculty of Life Sciences, University of Manchester, Manchester M13 9PL, UK
    BMC Syst Biol 4:43. 2010
  3. pmc LRRCE: a leucine-rich repeat cysteine capping motif unique to the chordate lineage
    Hosil Park
    Faculty of Life Sciences, Wellcome Trust Centre for Cell Matrix Research, University of Manchester, Manchester, UK
    BMC Genomics 9:599. 2008
  4. pmc Integrating GPCR-specific information with full text articles
    Bas Vroling
    CMBI, NCMLS, Radboud University Nijmegen Medical Centre, Geert Grooteplein 26 28, Nijmegen, 6525 GA, The Netherlands
    BMC Bioinformatics 12:362. 2011
  5. pmc Visualising biological data: a semantic approach to tool and database integration
    Steve Pettifer
    School of Computer Science, University of Manchester, Manchester, M13 9PL, UK
    BMC Bioinformatics 10:S19. 2009
  6. pmc Utopia documents: linking scholarly literature with research data
    T K Attwood
    School of Computer Science, Faculty of Life Sciences, University of Manchester, Manchester, UK
    Bioinformatics 26:i568-74. 2010
  7. pmc Calling International Rescue: knowledge lost in literature and data landslide!
    Teresa K Attwood
    School of Chemistry, The University of Manchester, Oxford Road, Manchester M13 9PL, UK
    Biochem J 424:317-33. 2009
  8. ncbi request reprint METIS: multiple extraction techniques for informative sentences
    A L Mitchell
    Faculty of Life Sciences and School of Computer Science, University of Manchester, UK
    Bioinformatics 21:4196-7. 2005
  9. pmc PRINTS prepares for the new millennium
    T K Attwood
    School of Biological Sciences, University of Manchester, Manchester M13 9PT, UK
    Nucleic Acids Res 27:220-5. 1999
  10. pmc PRINTS and its automatic supplement, prePRINTS
    T K Attwood
    School of Biological Sciences and Department of Computer Science, The University of Manchester, Manchester M13 9PT, UK
    Nucleic Acids Res 31:400-2. 2003

Detail Information

Publications29

  1. pmc The PRINTS database: a fine-grained protein sequence annotation and analysis resource--its status in 2012
    Teresa K Attwood
    Faculty of Life Sciences, The University of Manchester, Manchester M13 9PT, UK
    Database (Oxford) 2012:bas019. 2012
    ..Database URL: www.bioinf.manchester.ac.uk/dbbrowser/PRINTS/...
  2. pmc Low-complexity regions within protein sequences have position-dependent roles
    Alain Coletta
    Faculty of Life Sciences, University of Manchester, Manchester M13 9PL, UK
    BMC Syst Biol 4:43. 2010
    ..Here we undertake a systematic investigation of LCRs in order to explore their possible functional significance, placed in the particular context of Protein-Protein Interaction (PPI) networks and Gene Ontology (GO)-term analysis...
  3. pmc LRRCE: a leucine-rich repeat cysteine capping motif unique to the chordate lineage
    Hosil Park
    Faculty of Life Sciences, Wellcome Trust Centre for Cell Matrix Research, University of Manchester, Manchester, UK
    BMC Genomics 9:599. 2008
    ..To investigate if the LRRCE motif is a common structural feature found in other leucine-rich repeat proteins, we have defined characteristic sequence patterns and used them in genome-wide searches...
  4. pmc Integrating GPCR-specific information with full text articles
    Bas Vroling
    CMBI, NCMLS, Radboud University Nijmegen Medical Centre, Geert Grooteplein 26 28, Nijmegen, 6525 GA, The Netherlands
    BMC Bioinformatics 12:362. 2011
    ..With the continued growth in the volume both of experimental G protein-coupled receptor (GPCR) data and of the related peer-reviewed literature, the ability of GPCR researchers to keep up-to-date is becoming increasingly curtailed...
  5. pmc Visualising biological data: a semantic approach to tool and database integration
    Steve Pettifer
    School of Computer Science, University of Manchester, Manchester, M13 9PL, UK
    BMC Bioinformatics 10:S19. 2009
    ....
  6. pmc Utopia documents: linking scholarly literature with research data
    T K Attwood
    School of Computer Science, Faculty of Life Sciences, University of Manchester, Manchester, UK
    Bioinformatics 26:i568-74. 2010
    ..The need for intelligent tools to bridge this gap, to rescue the knowledge being systematically isolated in literature and data silos, is now widely acknowledged...
  7. pmc Calling International Rescue: knowledge lost in literature and data landslide!
    Teresa K Attwood
    School of Chemistry, The University of Manchester, Oxford Road, Manchester M13 9PL, UK
    Biochem J 424:317-33. 2009
    ..We ask you, please, to read the instructions carefully. The time has come: you may turn over your papers.....
  8. ncbi request reprint METIS: multiple extraction techniques for informative sentences
    A L Mitchell
    Faculty of Life Sciences and School of Computer Science, University of Manchester, UK
    Bioinformatics 21:4196-7. 2005
    ..These reports may then be augmented with pertinent sentences extracted from online biomedical literature via support vector machine and rule-based sentence classification systems...
  9. pmc PRINTS prepares for the new millennium
    T K Attwood
    School of Biological Sciences, University of Manchester, Manchester M13 9PT, UK
    Nucleic Acids Res 27:220-5. 1999
    ....
  10. pmc PRINTS and its automatic supplement, prePRINTS
    T K Attwood
    School of Biological Sciences and Department of Computer Science, The University of Manchester, Manchester M13 9PT, UK
    Nucleic Acids Res 31:400-2. 2003
    ..The databases are accessible for interrogation and searching at http://www.bioinf.man.ac.uk/dbbrowser/PRINTS/...
  11. ncbi request reprint FingerPRINTScan: intelligent searching of the PRINTS motif database
    P Scordis
    School of Biological Sciences, University of Manchester, UK
    Bioinformatics 15:799-806. 1999
    ..By identifying an unknown gene or protein as a member of a known family, we can infer a wealth of previously compiled information pertinent to that family and its members...
  12. ncbi request reprint PRECIS: protein reports engineered from concise information in SWISS-PROT
    A L Mitchell
    School of Biological Sciences, University of Manchester, Oxford Road, Manchester M13 9PT, UK
    Bioinformatics 19:1664-71. 2003
    ....
  13. ncbi request reprint BLAST PRINTS--alternative perspectives on sequence similarity
    W Wright
    School of Biological Sciences, Stopford Building, The University of Manchester, Oxford Road, Manchester M13 6PT, UK
    Bioinformatics 15:523-4. 1999
    ..The server thus couples the rapidity of BLAST searching with the sensitivity of fingerprint diagnoses, providing alternative perspectives on a given query...
  14. pmc CADRE: the Central Aspergillus Data REpository
    J E Mabey
    School of Medicine, University of Manchester, Manchester M13 9PT, UK
    Nucleic Acids Res 32:D401-5. 2004
    ..CADRE is accessible at http://www.cadre. man.ac.uk...
  15. pmc PRINTS-S: the database formerly known as PRINTS
    T K Attwood
    School of Biological Sciences, The University of Manchester, Manchester M13 9PT, UK
    Nucleic Acids Res 28:225-7. 2000
    ..The database is accessible for BLAST, fingerprint and text searches at http://www.bioinf.man.ac. uk/dbbrowser/PRINTS/..
  16. ncbi request reprint Which craft is best in bioinformatics?
    T K Attwood
    School of Biological Sciences, The University of Manchester, UK
    Comput Chem 25:329-39. 2001
    ..If bioinformatics is to tackle biological complexity meaningfully, the road ahead must therefore be paved with caution, rigour and pragmatism...
  17. ncbi request reprint EASY--an Expert Analysis SYstem for interpreting database search outputs
    J N Selley
    School of Biological Sciences, The University of Manchester, Oxford Road, Manchester, M13 9PT, UK
    Bioinformatics 17:105-6. 2001
    ..The program has been tested using a variety of protein families and was instrumental in resolving family assignments in a major update of the PRINTS database...
  18. ncbi request reprint Phylogenomic analysis and evolution of the potassium channel gene family
    G Moulton
    School of Biological Sciences, University of Manchester, Oxford Road, Manchester M13 9PT, United Kingdom
    Receptors Channels 9:363-77. 2003
    ..The trees are discussed in relation to the assignment of orthologous relationships between genes and vertebrate genome duplication...
  19. pmc PRINTS and PRINTS-S shed light on protein ancestry
    T K Attwood
    School of Biological Sciences, The University of Manchester, Manchester M13 9PT, UK
    Nucleic Acids Res 30:239-41. 2002
    ..The database is accessible for BLAST, fingerprint and text searches at http://www.bioinf.man.ac.uk/dbbrowser/PRINTS/...
  20. ncbi request reprint A compendium of specific motifs for diagnosing GPCR subtypes
    T K Attwood
    School of Biological Sciences, The University of Manchester, Oxford Road, M13 9PT, Manchester, UK
    Trends Pharmacol Sci 22:162-5. 2001
    ....
  21. ncbi request reprint Deriving structural and functional insights from a ligand-based hierarchical classification of G protein-coupled receptors
    T K Attwood
    School of Biological Sciences, University of Manchester, 2 19 Stopford Building, Oxford Road, Manchester, UK
    Protein Eng 15:7-12. 2002
    ..Mapping such fingerprints on to three-dimensional GPCR models offers powerful insights into the structural and functional determinants of subtype specificity...
  22. pmc Aspergillus genomes and the Aspergillus cloud
    Jane E Mabey Gilsenan
    School of Medicine, The University Hospital of South Manchester Wythenshawe, Manchester M23 9LT, UK
    Nucleic Acids Res 37:D509-14. 2009
    ..Aspergillus Genomes is accessible from http://www.aspergillus-genomes.org.uk...
  23. pmc The EMBRACE web service collection
    Steve Pettifer
    School of Computer Science, The University of Manchester, Manchester, M13 9PL, UK
    Nucleic Acids Res 38:W683-8. 2010
    ..embraceregistry.net) that collects together around 1000 services developed by the consortium partners. This article presents the current status of the collection and its associated recommendations and standards definitions...
  24. ncbi request reprint CINEMA-MX: a modular multiple alignment editor
    P W Lord
    School of Biological Sciences, University of Manchester, Oxford Road, Manchester M13 9PL, UK
    Bioinformatics 18:1402-3. 2002
    ..Here we report the development of an editor, CINEMA-MX, that addresses these issues. CINEMA-MX is highly modular and configurable, and we present examples to illustrate its extensibility...
  25. ncbi request reprint BioIE: extracting informative sentences from the biomedical literature
    Anna Divoli
    Faculty of Life Sciences and School of Computer Science, University of Manchester, UK
    Bioinformatics 21:2138-9. 2005
    ..Important Applications of BioIE are in, for example, annotation of microarray data and of protein databases...
  26. pmc FAN: fingerprint analysis of nucleotide sequences
    Neil Maudling
    School of Biological Sciences and Department of Computer Science, University of Manchester, Manchester M13 9PT, UK
    Nucleic Acids Res 32:W620-3. 2004
    ..Furthermore, there is no need for prior translation of the nucleotide sequences. A web-based interface to the software is available at http://bioinf.man.ac.uk/cgi-bin/neil/ntfront.pl...
  27. ncbi request reprint Progress in bioinformatics and the importance of being earnest
    T K Attwood
    School of Biological Sciences, Department of Computer Science, University of Manchester, Oxford Road, Manchester M13 9PT, UK
    Biotechnol Annu Rev 8:1-54. 2002
    ....
  28. ncbi request reprint Bioinformatics approaches for the classification of G-protein-coupled receptors
    Anna Gaulton
    School of Biological Sciences and Department of Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PT, UK
    Curr Opin Pharmacol 3:114-20. 2003
    ....
  29. pmc Motif3D: Relating protein sequence motifs to 3D structure
    Anna Gaulton
    School of Biological Sciences and Department of Computer Science, University of Manchester, Manchester M13 9PT, UK
    Nucleic Acids Res 31:3333-6. 2003
    ..Motif3D can be used via the web interface available at: http://www.bioinf.man.ac.uk/dbbrowser/motif3d/motif3d.html...