D B Archer

Summary

Affiliation: University of Nottingham
Country: UK

Publications

  1. request reprint
    Archer D. Filamentous fungi as microbial cell factories for food use. Curr Opin Biotechnol. 2000;11:478-83 pubmed
    ....
  2. van Munster J, Daly P, Delmas S, Pullan S, Blythe M, Malla S, et al. The role of carbon starvation in the induction of enzymes that degrade plant-derived carbohydrates in Aspergillus niger. Fungal Genet Biol. 2014;72:34-47 pubmed publisher
    ..Analysis of the enzymatic activity and the reaction products, indicates that these proteins are enzymes that can degrade various plant polysaccharides to generate both known, as well as potentially new, inducers of CAZymes. ..
  3. Raulo R, Kokolski M, Archer D. The roles of the zinc finger transcription factors XlnR, ClrA and ClrB in the breakdown of lignocellulose by Aspergillus niger. AMB Express. 2016;6:5 pubmed publisher
    ..The characterisation of TFs, such as ClrB, provides new areas of improvement for industrial processes for production of second generation biofuels. ..
  4. Daly P, van Munster J, Kokolski M, Sang F, Blythe M, Malla S, et al. Transcriptomic responses of mixed cultures of ascomycete fungi to lignocellulose using dual RNA-seq reveal inter-species antagonism and limited beneficial effects on CAZyme expression. Fungal Genet Biol. 2017;102:4-21 pubmed publisher
    ..reesei and the other fungi was the most prominent feature of this study. ..
  5. Novodvorska M, Stratford M, Blythe M, Wilson R, Beniston R, Archer D. Metabolic activity in dormant conidia of Aspergillus niger and developmental changes during conidial outgrowth. Fungal Genet Biol. 2016;94:23-31 pubmed publisher
    ..In conclusion, we show that conidia suspended in water are not completely dormant and that conidial outgrowth involves fermentative metabolism that precedes respiration. ..
  6. Ries L, Pullan S, Delmas S, Malla S, Blythe M, Archer D. Genome-wide transcriptional response of Trichoderma reesei to lignocellulose using RNA sequencing and comparison with Aspergillus niger. BMC Genomics. 2013;14:541 pubmed publisher
    ..The global induction of genes in response to exposure of T. reesei to wheat straw was explored using RNA-seq and compared to published RNA-seq data and model of how A. niger senses and responds to wheat straw...
  7. Novodvorska M, Hayer K, Pullan S, Wilson R, Blythe M, Stam H, et al. Trancriptional landscape of Aspergillus niger at breaking of conidial dormancy revealed by RNA-sequencing. BMC Genomics. 2013;14:246 pubmed publisher
    ..niger conidia using both next generation RNA-sequencing and GeneChips. The metabolism of storage compounds during conidial germination was also examined and compared to the transcript levels from associated genes...
  8. Carvalho N, Jørgensen T, Arentshorst M, Nitsche B, van den Hondel C, Archer D, et al. Genome-wide expression analysis upon constitutive activation of the HacA bZIP transcription factor in Aspergillus niger reveals a coordinated cellular response to counteract ER stress. BMC Genomics. 2012;13:350 pubmed publisher
    ..The impact of constitutive HacA activity during exponential growth was explored in bioreactor controlled cultures using transcriptomic analysis to identify affected genes and processes...
  9. Guillemette T, van Peij N, Goosen T, Lanthaler K, Robson G, van den Hondel C, et al. Genomic analysis of the secretion stress response in the enzyme-producing cell factory Aspergillus niger. BMC Genomics. 2007;8:158 pubmed
    ..This study aims at uncovering transcriptional and translational responses occurring in A. niger exposed to secretion stress...
  10. Stratford M, Plumridge A, Archer D. Decarboxylation of sorbic acid by spoilage yeasts is associated with the PAD1 gene. Appl Environ Microbiol. 2007;73:6534-42 pubmed
    ....

Detail Information

Publications10

  1. request reprint
    Archer D. Filamentous fungi as microbial cell factories for food use. Curr Opin Biotechnol. 2000;11:478-83 pubmed
    ....
  2. van Munster J, Daly P, Delmas S, Pullan S, Blythe M, Malla S, et al. The role of carbon starvation in the induction of enzymes that degrade plant-derived carbohydrates in Aspergillus niger. Fungal Genet Biol. 2014;72:34-47 pubmed publisher
    ..Analysis of the enzymatic activity and the reaction products, indicates that these proteins are enzymes that can degrade various plant polysaccharides to generate both known, as well as potentially new, inducers of CAZymes. ..
  3. Raulo R, Kokolski M, Archer D. The roles of the zinc finger transcription factors XlnR, ClrA and ClrB in the breakdown of lignocellulose by Aspergillus niger. AMB Express. 2016;6:5 pubmed publisher
    ..The characterisation of TFs, such as ClrB, provides new areas of improvement for industrial processes for production of second generation biofuels. ..
  4. Daly P, van Munster J, Kokolski M, Sang F, Blythe M, Malla S, et al. Transcriptomic responses of mixed cultures of ascomycete fungi to lignocellulose using dual RNA-seq reveal inter-species antagonism and limited beneficial effects on CAZyme expression. Fungal Genet Biol. 2017;102:4-21 pubmed publisher
    ..reesei and the other fungi was the most prominent feature of this study. ..
  5. Novodvorska M, Stratford M, Blythe M, Wilson R, Beniston R, Archer D. Metabolic activity in dormant conidia of Aspergillus niger and developmental changes during conidial outgrowth. Fungal Genet Biol. 2016;94:23-31 pubmed publisher
    ..In conclusion, we show that conidia suspended in water are not completely dormant and that conidial outgrowth involves fermentative metabolism that precedes respiration. ..
  6. Ries L, Pullan S, Delmas S, Malla S, Blythe M, Archer D. Genome-wide transcriptional response of Trichoderma reesei to lignocellulose using RNA sequencing and comparison with Aspergillus niger. BMC Genomics. 2013;14:541 pubmed publisher
    ..The global induction of genes in response to exposure of T. reesei to wheat straw was explored using RNA-seq and compared to published RNA-seq data and model of how A. niger senses and responds to wheat straw...
  7. Novodvorska M, Hayer K, Pullan S, Wilson R, Blythe M, Stam H, et al. Trancriptional landscape of Aspergillus niger at breaking of conidial dormancy revealed by RNA-sequencing. BMC Genomics. 2013;14:246 pubmed publisher
    ..niger conidia using both next generation RNA-sequencing and GeneChips. The metabolism of storage compounds during conidial germination was also examined and compared to the transcript levels from associated genes...
  8. Carvalho N, Jørgensen T, Arentshorst M, Nitsche B, van den Hondel C, Archer D, et al. Genome-wide expression analysis upon constitutive activation of the HacA bZIP transcription factor in Aspergillus niger reveals a coordinated cellular response to counteract ER stress. BMC Genomics. 2012;13:350 pubmed publisher
    ..The impact of constitutive HacA activity during exponential growth was explored in bioreactor controlled cultures using transcriptomic analysis to identify affected genes and processes...
  9. Guillemette T, van Peij N, Goosen T, Lanthaler K, Robson G, van den Hondel C, et al. Genomic analysis of the secretion stress response in the enzyme-producing cell factory Aspergillus niger. BMC Genomics. 2007;8:158 pubmed
    ..This study aims at uncovering transcriptional and translational responses occurring in A. niger exposed to secretion stress...
  10. Stratford M, Plumridge A, Archer D. Decarboxylation of sorbic acid by spoilage yeasts is associated with the PAD1 gene. Appl Environ Microbiol. 2007;73:6534-42 pubmed
    ....