Robin Allaby

Summary

Affiliation: University of Warwick
Country: UK

Publications

  1. ncbi request reprint Evidence of the domestication history of flax (Linum usitatissimum L.) from genetic diversity of the sad2 locus
    Robin G Allaby
    Department of Anthropology, Binghamton University SUNY, Binghamton, NY 13902, USA
    Theor Appl Genet 112:58-65. 2005
  2. pmc A complete ancient RNA genome: identification, reconstruction and evolutionary history of archaeological Barley Stripe Mosaic Virus
    Oliver Smith
    School of Life Sciences, Gibbet Hill Campus, University of Warwick, Coventry CV4 7AL
    Sci Rep 4:4003. 2014
  3. pmc The limits of mean-field heterozygosity estimates under spatial extension in simulated plant populations
    James L Kitchen
    School of Life Sciences, University of Warwick, Coventry, United Kingdom
    PLoS ONE 7:e43254. 2012
  4. pmc Archaeogenetic evidence of ancient nubian barley evolution from six to two-row indicates local adaptation
    Sarah A Palmer
    Warwick HRI, The University of Warwick, Wellesbourne, UK
    PLoS ONE 4:e6301. 2009
  5. pmc Phylogenomic Analysis Reveals Extensive Phylogenetic Mosaicism in the Human GPCR Superfamily
    Robin G Allaby
    Warwick HRI, University of Warwick, Wellesbourne, CV35 9EF, UK
    Evol Bioinform Online 3:357-70. 2007
  6. pmc MCMC-ODPR: primer design optimization using Markov Chain Monte Carlo sampling
    James L Kitchen
    School of Life Sciences, University of Warwick, Gibbet Hill, Coventry, CV4 7AL, UK
    BMC Bioinformatics 13:287. 2012
  7. pmc The genetic expectations of a protracted model for the origins of domesticated crops
    Robin G Allaby
    Warwick HRI, University of Warwick, Wellesbourne, Warwick CV35 9EF, United Kingdom
    Proc Natl Acad Sci U S A 105:13982-6. 2008
  8. doi request reprint Integrating the processes in the evolutionary system of domestication
    Robin Allaby
    Warwick HRI, University of Warwick, Wellesbourne, Warwick CV35 9EF, UK
    J Exp Bot 61:935-44. 2010
  9. ncbi request reprint AFLP data and the origins of domesticated crops
    Robin G Allaby
    Department of Biomolecular Sciences, University of Manchester Institute of Science and Technology, Manchester M60 1QD, UK
    Genome 46:448-53. 2003
  10. pmc Elevated substitution rates estimated from ancient DNA sequences
    Simon Y W Ho
    Department of Zoology, University of Oxford, Oxford OX1 3PS, UK
    Biol Lett 3:702-5. 2007

Collaborators

Detail Information

Publications10

  1. ncbi request reprint Evidence of the domestication history of flax (Linum usitatissimum L.) from genetic diversity of the sad2 locus
    Robin G Allaby
    Department of Anthropology, Binghamton University SUNY, Binghamton, NY 13902, USA
    Theor Appl Genet 112:58-65. 2005
    ..These findings provide new insight into flax domestication and are significant for the continuous exploration of the flax germplasm for utilization...
  2. pmc A complete ancient RNA genome: identification, reconstruction and evolutionary history of archaeological Barley Stripe Mosaic Virus
    Oliver Smith
    School of Life Sciences, Gibbet Hill Campus, University of Warwick, Coventry CV4 7AL
    Sci Rep 4:4003. 2014
    ..We conclude that this viral lineage originated in the Near East or North Africa, and spread to North America and East Asia with their hosts along historical trade routes. ..
  3. pmc The limits of mean-field heterozygosity estimates under spatial extension in simulated plant populations
    James L Kitchen
    School of Life Sciences, University of Warwick, Coventry, United Kingdom
    PLoS ONE 7:e43254. 2012
    ..The IBM model showed that mean field calculations can be reasonably applied to natural outbreeding plant populations that occur at a density in which individuals are less than the average pollen dispersal distance from their neighbors...
  4. pmc Archaeogenetic evidence of ancient nubian barley evolution from six to two-row indicates local adaptation
    Sarah A Palmer
    Warwick HRI, The University of Warwick, Wellesbourne, UK
    PLoS ONE 4:e6301. 2009
    ..The phenotype occurs throughout all strata at Qasr Ibrim, which range in age from 3000 to a few hundred years...
  5. pmc Phylogenomic Analysis Reveals Extensive Phylogenetic Mosaicism in the Human GPCR Superfamily
    Robin G Allaby
    Warwick HRI, University of Warwick, Wellesbourne, CV35 9EF, UK
    Evol Bioinform Online 3:357-70. 2007
    ..HTP analysis is complementary to conventional phylogenomic analyses revealing mosaicism that would not otherwise have been detectable through conventional phylogenetics...
  6. pmc MCMC-ODPR: primer design optimization using Markov Chain Monte Carlo sampling
    James L Kitchen
    School of Life Sciences, University of Warwick, Gibbet Hill, Coventry, CV4 7AL, UK
    BMC Bioinformatics 13:287. 2012
    ..We have implemented Metropolis-Hastings Markov Chain Monte Carlo for optimizing primer reuse. We call it the Markov Chain Monte Carlo Optimized Degenerate Primer Reuse (MCMC-ODPR) algorithm...
  7. pmc The genetic expectations of a protracted model for the origins of domesticated crops
    Robin G Allaby
    Warwick HRI, University of Warwick, Wellesbourne, Warwick CV35 9EF, United Kingdom
    Proc Natl Acad Sci U S A 105:13982-6. 2008
    ..We identify four different interacting levels of organization that now need to be considered to track crop origins from modern genetic diversity, making crop origins a problem that could be addressed through system-based approaches...
  8. doi request reprint Integrating the processes in the evolutionary system of domestication
    Robin Allaby
    Warwick HRI, University of Warwick, Wellesbourne, Warwick CV35 9EF, UK
    J Exp Bot 61:935-44. 2010
    ..One possible way forward is to use Bayesian approximation approaches that allow complex systems to be measured in a way that does not require such formality...
  9. ncbi request reprint AFLP data and the origins of domesticated crops
    Robin G Allaby
    Department of Biomolecular Sciences, University of Manchester Institute of Science and Technology, Manchester M60 1QD, UK
    Genome 46:448-53. 2003
    ..The resultsbring into question the use of this method to infer the origins of real crops...
  10. pmc Elevated substitution rates estimated from ancient DNA sequences
    Simon Y W Ho
    Department of Zoology, University of Oxford, Oxford OX1 3PS, UK
    Biol Lett 3:702-5. 2007
    ..Our new estimates confirm that the substitution rates estimated from ancient DNA sequences are elevated above long-term phylogenetic levels...