Peter J A Cock

Summary

Affiliation: Scottish Crop Research Institute
Country: UK

Publications

  1. pmc Biopython: freely available Python tools for computational molecular biology and bioinformatics
    Peter J A Cock
    Plant Pathology, SCRI, Invergowrie, Dundee, UK
    Bioinformatics 25:1422-3. 2009
  2. pmc The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants
    Peter J A Cock
    Plant Pathology, SCRI, Invergowrie, Dundee DD2 5DA, UK
    Nucleic Acids Res 38:1767-71. 2010
  3. doi request reprint Identification and functional characterization of effectors in expressed sequence tags from various life cycle stages of the potato cyst nematode Globodera pallida
    John T Jones
    Plant Pathology Programme, SCRI, Invergowrie, Dundee DD2 5DA, UK
    Mol Plant Pathol 10:815-28. 2009
  4. doi request reprint Using Tablet for visual exploration of second-generation sequencing data
    Iain Milne
    Information and Computational Sciences, The James Hutton Institute JHI, Dundee DD2 5DA, Scotland, UK
    Brief Bioinform 14:193-202. 2013
  5. doi request reprint Galaxy as a platform for identifying candidate pathogen effectors
    Peter J A Cock
    Information and Computational Sciences, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
    Methods Mol Biol 1127:3-15. 2014

Collaborators

Detail Information

Publications5

  1. pmc Biopython: freely available Python tools for computational molecular biology and bioinformatics
    Peter J A Cock
    Plant Pathology, SCRI, Invergowrie, Dundee, UK
    Bioinformatics 25:1422-3. 2009
    ....
  2. pmc The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants
    Peter J A Cock
    Plant Pathology, SCRI, Invergowrie, Dundee DD2 5DA, UK
    Nucleic Acids Res 38:1767-71. 2010
    ..Being an open access publication, it is hoped that this description, with the example files provided as Supplementary Data, will serve in future as a reference for this important file format...
  3. doi request reprint Identification and functional characterization of effectors in expressed sequence tags from various life cycle stages of the potato cyst nematode Globodera pallida
    John T Jones
    Plant Pathology Programme, SCRI, Invergowrie, Dundee DD2 5DA, UK
    Mol Plant Pathol 10:815-28. 2009
    ..Our data are therefore consistent with the suggestion that the SPRYSEC proteins suppress host defences, as suggested previously, and that they achieve this through interaction with a range of host targets...
  4. doi request reprint Using Tablet for visual exploration of second-generation sequencing data
    Iain Milne
    Information and Computational Sciences, The James Hutton Institute JHI, Dundee DD2 5DA, Scotland, UK
    Brief Bioinform 14:193-202. 2013
    ..Tablet installers can be freely downloaded from http://bioinf.hutton.ac.uk/tablet in 32 or 64-bit versions for Windows, OS X, Linux or Solaris. For further details on the Tablet, contact tablet@hutton.ac.uk...
  5. doi request reprint Galaxy as a platform for identifying candidate pathogen effectors
    Peter J A Cock
    Information and Computational Sciences, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK
    Methods Mol Biol 1127:3-15. 2014
    ..Our main example focuses on nematode plant pathogens where signal peptide and transmembrane prediction tools are used to identify predicted secreted proteins. ..