Jack A Gilbert

Summary

Affiliation: Plymouth Marine Laboratory
Country: UK

Publications

  1. doi Potential for phosphonoacetate utilization by marine bacteria in temperate coastal waters
    Jack A Gilbert
    Plymouth Marine Laboratory, Prospect Place, The Hoe, Plymouth PL1 3DH, UK
    Environ Microbiol 11:111-25. 2009
  2. pmc Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities
    Jack A Gilbert
    Plymouth Marine Laboratory, Prospect Place, Plymouth, United Kingdom
    PLoS ONE 3:e3042. 2008
  3. doi Metagenomics
    Jack A Gilbert
    Plymouth Marine Laboratory, The Hoe, Plymouth, UK
    Methods Mol Biol 733:173-83. 2011
  4. doi The seasonal structure of microbial communities in the Western English Channel
    Jack A Gilbert
    Plymouth Marine Laboratory, Prospect Place, Plymouth, PL1 3DH, UK
    Environ Microbiol 11:3132-9. 2009
  5. doi Gene expression profiling: metatranscriptomics
    Jack A Gilbert
    Plymouth Marine Laboratory, The Hoe, Plymouth, UK
    Methods Mol Biol 733:195-205. 2011
  6. pmc The taxonomic and functional diversity of microbes at a temperate coastal site: a 'multi-omic' study of seasonal and diel temporal variation
    Jack A Gilbert
    Plymouth Marine Laboratory, Plymouth, United Kingdom
    PLoS ONE 5:e15545. 2010
  7. doi Bias in assessments of marine microbial biodiversity in fosmid libraries as evaluated by pyrosequencing
    Ben Temperton
    Plymouth Marine Laboratory, Plymouth, UK
    ISME J 3:792-6. 2009
  8. pmc Defining seasonal marine microbial community dynamics
    Jack A Gilbert
    Plymouth Marine Laboratory, Prospect Place, Plymouth, UK
    ISME J 6:298-308. 2012
  9. doi Isolation and initial characterization of a novel type of Baeyer-Villiger monooxygenase activity from a marine microorganism
    Andrew Willetts
    Plymouth Marine Laboratory, Prospect Place, The Hoe, Plymouth, UK
    Microb Biotechnol 5:549-59. 2012
  10. doi Bioturbation: impact on the marine nitrogen cycle
    Bonnie Laverock
    Plymouth Marine Laboratory, Prospect Place, Plymouth PL1 3DH, UK
    Biochem Soc Trans 39:315-20. 2011

Detail Information

Publications13

  1. doi Potential for phosphonoacetate utilization by marine bacteria in temperate coastal waters
    Jack A Gilbert
    Plymouth Marine Laboratory, Prospect Place, The Hoe, Plymouth PL1 3DH, UK
    Environ Microbiol 11:111-25. 2009
    ..The fact that the capacity to utilize phosphonoacetate was evident in each of the three coastal environments suggests the potential for widespread utilization of this bioavailable P source...
  2. pmc Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities
    Jack A Gilbert
    Plymouth Marine Laboratory, Prospect Place, Plymouth, United Kingdom
    PLoS ONE 3:e3042. 2008
    ..The application of high-throughput sequencing technology is now enabling access to both known and previously unknown transcripts in natural communities...
  3. doi Metagenomics
    Jack A Gilbert
    Plymouth Marine Laboratory, The Hoe, Plymouth, UK
    Methods Mol Biol 733:173-83. 2011
    ..We hope that the information provided here will be useful to establish the techniques in most reasonably equipped molecular biology laboratories...
  4. doi The seasonal structure of microbial communities in the Western English Channel
    Jack A Gilbert
    Plymouth Marine Laboratory, Prospect Place, Plymouth, PL1 3DH, UK
    Environ Microbiol 11:3132-9. 2009
    ..There is also evidence for seasonal succession, primarily reflecting changes among dominant taxa. These changes in structure were significantly correlated to a combination of temperature, phosphate and silicate concentrations...
  5. doi Gene expression profiling: metatranscriptomics
    Jack A Gilbert
    Plymouth Marine Laboratory, The Hoe, Plymouth, UK
    Methods Mol Biol 733:195-205. 2011
    ..Also, a section is dedicated for outlining a bioinformatic procedure for the analysis of metatranscriptomic datasets...
  6. pmc The taxonomic and functional diversity of microbes at a temperate coastal site: a 'multi-omic' study of seasonal and diel temporal variation
    Jack A Gilbert
    Plymouth Marine Laboratory, Plymouth, United Kingdom
    PLoS ONE 5:e15545. 2010
    ..Further, the presence of a substantial proportion of orphan sequences underscores the need to determine the gene products of sequences with currently unknown function...
  7. doi Bias in assessments of marine microbial biodiversity in fosmid libraries as evaluated by pyrosequencing
    Ben Temperton
    Plymouth Marine Laboratory, Plymouth, UK
    ISME J 3:792-6. 2009
    ..This study suggests that, although fosmid libraries can be extremely useful, caution must be taken when directly inferring community composition from metagenomic fosmid libraries...
  8. pmc Defining seasonal marine microbial community dynamics
    Jack A Gilbert
    Plymouth Marine Laboratory, Prospect Place, Plymouth, UK
    ISME J 6:298-308. 2012
    ..Interestingly, microbial association network analysis showed that correlations in abundance were stronger within bacterial taxa rather than between bacteria and eukaryotes, or between bacteria and environmental variables...
  9. doi Isolation and initial characterization of a novel type of Baeyer-Villiger monooxygenase activity from a marine microorganism
    Andrew Willetts
    Plymouth Marine Laboratory, Prospect Place, The Hoe, Plymouth, UK
    Microb Biotechnol 5:549-59. 2012
    ..Although low, abundance was detected in samples from many marine provinces, confirming the potential for biodiscovery in marine microorganisms...
  10. doi Bioturbation: impact on the marine nitrogen cycle
    Bonnie Laverock
    Plymouth Marine Laboratory, Prospect Place, Plymouth PL1 3DH, UK
    Biochem Soc Trans 39:315-20. 2011
    ..In the present paper we discuss the potential for bioturbation to significantly affect marine nitrogen cycling, as well as the molecular techniques used to study microbial nitrogen cycling communities and directions for future study...
  11. doi Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments
    Bonnie Laverock
    Plymouth Marine Laboratory, Plymouth, UK
    ISME J 4:1531-44. 2010
    ..In an area of high macrofaunal abundance, this could lead to alterations in the microbial transformations of important nutrients at the sediment-water interface...
  12. doi A rare SAR11 fosmid clone confirming genetic variability in the 'Candidatus Pelagibacter ubique' genome
    Jack A Gilbert
    Plymouth Marine Laboratory, Prospect Place, Plymouth, UK
    ISME J 2:790-3. 2008
    ..Variation in SAR11 genomes from different locations might explain why SAR11 is abundant in so many diverse marine provinces...
  13. ncbi Microbial metagenomics: beyond the genome
    Jack A Gilbert
    Plymouth Marine Laboratory, Plymouth PL1 3DH, United Kingdom
    Ann Rev Mar Sci 3:347-71. 2011
    ....