Research Topics
Species | John AshburnerSummaryAffiliation: Institute of Neurology Country: UK Publications
| Collaborators
|
Detail Information
Publications
Voxel-based cortical thickness measurements in MRIChloe Hutton
Wellcome Trust Centre for Neuroimaging, Institute of Neurology, UCL, London, UK
Neuroimage 40:1701-10. 2008..We propose that the analysis of VBCT maps can provide results that are complementary to other anatomical analyses such as voxel-based morphometry...
A fast diffeomorphic image registration algorithmJohn Ashburner
Wellcome Trust Centre for Neuroimaging, 12 Queen Square, London, UK
Neuroimage 38:95-113. 2007....
Automatic classification of MR scans in Alzheimer's diseaseStefan Kloppel
Wellcome Trust Centre for Neuroimaging, Institute of Neurology, University College London, London, UK
Brain 131:681-9. 2008..Thirdly, the method is robust and can be generalized across different centres. This suggests an important role for computer based diagnostic image analysis for clinical practice...
Computing average shaped tissue probability templatesJohn Ashburner
Wellcome Trust Centre for Neuroimaging, 12 Queen Square, London, WC1N 3BG, UK
Neuroimage 45:333-41. 2009..g. grey and white matter) are registered simultaneously with the current template estimate. In order to generalise the resulting template to a broader range of subjects, a template blurriness prior is included within the model...
Bayesian decoding of brain imagesKarl Friston
Wellcome Trust Centre for Neuroimaging, Institute of Neurology, UCL, 12 Queen Square, London WC1N 3BG, UK
Neuroimage 39:181-205. 2008..We illustrate MVB using simulated and real data, with a special focus on model comparison; where models can differ in the form of the mapping (i.e., neuronal representation) within one region, or in the (combination of) regions per se...
Unified segmentation based correction of R1 brain maps for RF transmit field inhomogeneities (UNICORT)Nikolaus Weiskopf
Wellcome Trust Centre for Neuroimaging, UCL Institute of Neurology, University College London, London, UK
Neuroimage 54:2116-24. 2011..UNICORT is easy to apply, as it is computationally efficient and its basic framework is implemented as part of the tissue segmentation in SPM8...
Kernel regression for fMRI pattern predictionCarlton Chu
Wellcome Trust Centre for Neuroimaging, UCL Institute of Neurology, London, UK
Neuroimage 56:662-73. 2011..Although the original work was aimed at the PBAIC, many techniques described in this paper can be generally applied to any fMRI decoding works to increase the prediction accuracy...
Spatial normalization of lesioned brains: performance evaluation and impact on fMRI analysesJenny Crinion
Wellcome Trust Centre for Neuroimaging, UCL, 12 Queen Square, London WC1N 3BG, UK
Neuroimage 37:866-75. 2007..This has important implications for users of both structural and functional imaging techniques in the study of patients with structural brain damage...
Computational anatomy with the SPM softwareJohn Ashburner
Wellcome Trust Centre for Neuroimaging, London, UK
Magn Reson Imaging 27:1163-74. 2009..In contrast, the overall form of the brain may be more accurately modeled using multivariate approaches. Such models of anatomical variability may prove accurate enough for computer assisted diagnoses...
A comparison between voxel-based cortical thickness and voxel-based morphometry in normal agingChloe Hutton
Wellcome Trust Centre for Neuroimaging, UCL Institute of Neurology, University College London, 12 Queen Square, London WC1N 3BG, UK
Neuroimage 48:371-80. 2009..We therefore propose that used together, these techniques can separate the underlying grey matter changes, highlighting the utility of combining these complementary methods...
Diffeomorphic registration using geodesic shooting and Gauss-Newton optimisationJohn Ashburner
Wellcome Trust Centre for Neuroimaging, UCL Institute of Neurology, London, UK
Neuroimage 55:954-67. 2011..The algorithm was evaluated using freely available manually labelled datasets, and found to compare favourably with other inter-subject registration algorithms evaluated using the same data...
Confirmation of functional zones within the human subthalamic nucleus: patterns of connectivity and sub-parcellation using diffusion weighted imagingChristian Lambert
Wellcome Trust Centre for Neuroimaging, UCL Institute of Neurology, London, UK
Neuroimage 60:83-94. 2012....
SPM: a historyJohn Ashburner
Wellcome Trust Centre for Neuroimaging, 12 Queen Square, London WC1N 3BG, UK
Neuroimage 62:791-800. 2012..Karl Friston began the SPM project around 1991. The rest is history...
Prognostic and diagnostic potential of the structural neuroanatomy of depressionSergi G Costafreda
Institute of Psychiatry, King s College London, London, UK
PLoS ONE 4:e6353. 2009..In the present study, we examined the prognostic and diagnostic potential of the structural neural correlates of depression...
Interpreting scan data acquired from multiple scanners: a study with Alzheimer's diseaseCynthia M Stonnington
Wellcome Trust Centre for Neuroimaging, Institute of Neurology, UCL, London, UK
Neuroimage 39:1180-5. 2008..Similar analyses in other multi-scanner data-sets could be used to justify the pooling of data when needed, such as in studies of rare disorders or in multi-center designs...
Unified segmentationJohn Ashburner
Wellcome Department of Imaging Neuroscience, 12 Queen Square, London, WC1N 3BG, UK
Neuroimage 26:839-51. 2005..A strategy for optimising the model parameters is described, along with the requisite partial derivatives of the objective function...
Multivariate models of inter-subject anatomical variabilityJohn Ashburner
Wellcome Trust Centre for Neuroimaging, London, UK
Neuroimage 56:422-39. 2011..Knowledge of some basic linear algebra and probability theory should make the review easier to follow, although it may still have something to offer to those readers whose mathematics may be more limited...
Variational free energy and the Laplace approximationKarl Friston
The Wellcome Department of Imaging Neuroscience, Institute of Neurology, UCL, 12 Queen Square, London, WC1N 3BG, UK
Neuroimage 34:220-34. 2007..Finally, we also consider, briefly, dynamic models and how these inform the regularisation of free energy ascent schemes, like EM and ReML...
Computer-assisted imaging to assess brain structure in healthy and diseased brainsJohn Ashburner
The Wellcome Department of Imaging Neuroscience, Institute of Neurology, London, UK
Lancet Neurol 2:79-88. 2003....
Normal variation in fronto-occipital circuitry and cerebellar structure with an autism-associated polymorphism of CNTNAP2Geoffrey C Y Tan
Wellcome Trust Centre for Neuroimaging, Institute of Neurology, University College London, UK
Neuroimage 53:1030-42. 2010..The finding suggests the possibility that the heterogeneous manifestations of ASD can be aetiologically characterised into distinct subtypes through genetic-morphological analysis...
Dynamic positron emission tomography data-driven analysis using sparse Bayesian learningJyh Ying Peng
Institute of Statistical Science, Academia Sinica, Taipei 11529, Taiwan
IEEE Trans Med Imaging 27:1356-69. 2008..In addition, the Bayesian approach returns the posterior distribution which allows for some characterisation of the error component. The method is applied to the estimation of parametric images of neuroreceptor radioligand studies...
Evidence for segregated and integrative connectivity patterns in the human Basal GangliaBogdan Draganski
Wellcome Trust Centre for Neuroimaging, Institute of Neurology, UCL, London WC1N 3BG, United Kingdom
J Neurosci 28:7143-52. 2008..We believe that this method can be used to examine pathophysiological concepts in a number of basal ganglia-related disorders...
A tensor based morphometry study of longitudinal gray matter contraction in FTDSimona M Brambati
Memory and Aging Center, UCSF Department of Neurology, 350 Parnassus Ave, Suite 706, San Francisco, CA 94143, USA
Neuroimage 35:998-1003. 2007..These results suggest that TBM might be useful in tracking progression of regional atrophy in FTD...
How to correct susceptibility distortions in spin-echo echo-planar images: application to diffusion tensor imagingJesper L R Andersson
Karolinska MR Research Centre, Stockholm, Sweden
Neuroimage 20:870-88. 2003..The resulting DT maps exhibit considerably higher geometric fidelity, as assessed by comparison to an image volume acquired using a conventional 3D MR technique...
Automatic differentiation of anatomical patterns in the human brain: validation with studies of degenerative dementiasCatriona D Good
Wellcome Department of Cognitive Neurology, Institute of Neurology, University College London, 12 Queen Square, London WC1N 3BG, United Kingdom
Neuroimage 17:29-46. 2002....
Image distortion correction in fMRI: A quantitative evaluationChloe Hutton
Wellcome Department of Cognitive Neurology, Institute of Neurology, London WCIN 3BG, United Kingdom
Neuroimage 16:217-40. 2002..However, we suggest that the variance between successively measured field maps introduces additional unwanted variance in the voxel time-series and is therefore not adequate to correct for time-varying distortions...
