Research Topics
Species | J WainSummaryAffiliation: Imperial College Country: UK Publications
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Publications
The emergence of multidrug resistance to antimicrobial agents for the treatment of typhoid feverJohn Wain
Centre for Molecular Microbiology and Infection, Level 3, Flowers Building, Imperial College, South Kensington, London SW7 2AZ, UK
Trans R Soc Trop Med Hyg 98:423-30. 2004..These regions appear to be hot spots for DNA acquisition in IncHI1 plasmids...
Molecular analysis of incHI1 antimicrobial resistance plasmids from Salmonella serovar Typhi strains associated with typhoid feverJohn Wain
Wellcome Trust Clinical Research Unit, Department of Biological Sciences, Imperial College, London
Antimicrob Agents Chemother 47:2732-9. 2003..In 1996 a single RFLP type, RFLP7, was found to carry the dfrA7 and sul-1 genes, which were not present on R27 or pHCM1. This plasmid type appears to have a selective advantage over other plasmids with the same resistance phenotype...
Quantitation of bacteria in bone marrow from patients with typhoid fever: relationship between counts and clinical featuresJ Wain
Wellcome Trust Clinical Research Unit, Centre for Tropical Diseases, Ho Chi Minh City, Vietnam
J Clin Microbiol 39:1571-6. 2001..01) and positively with fever clearance time after treatment (R = 0.4, P < 0.001). The bacterial load in bone marrow therefore may reflect the clinical course of the infection, and high levels may suppress neutrophil proliferation...
Value of a single-tube widal test in diagnosis of typhoid fever in VietnamC M Parry
Wellcome Trust Clinical Research Unit, Cho Quan Hospital, Ho Chi Minh City, Vietnam
J Clin Microbiol 37:2882-6. 1999..However, 14% of the positive results would be false-positive, and 10% of the negative results would be false-negative. The Widal test can be helpful in the laboratory diagnosis of typhoid fever in Vietnam if interpreted with care...
Nasal carriage in Vietnamese children of Streptococcus pneumoniae resistant to multiple antimicrobial agentsC M Parry
Wellcome Trust Clinical Research Unit, Cho Quan Hospital, District 5, Ho Chi Minh City, Vietnam
Antimicrob Agents Chemother 44:484-8. 2000..This study suggests that resistance to penicillin and other antimicrobial agents is common in carriage isolates of S. pneumoniae from children in Vietnam...
Melioidosis in Southern Vietnam: clinical surveillance and environmental samplingC M Parry
Wellcome Trust Clinical Research Unit, Centre for Tropical Diseases, Ho Chi Minh City, Vietnam
Clin Infect Dis 29:1323-6. 1999..The low incidence of melioidosis in the provinces around Ho Chi Minh City may be explained by the restricted distribution of ara-negative B. pseudomallei in the soil in this area...
Serology of typhoid fever in an area of endemicity and its relevance to diagnosisD House
Department of Biochemistry, Imperial College of Science, Technology and Medicine, Exhibition Road, South Kensington, London SW7 2AZ, United Kingdom
J Clin Microbiol 39:1002-7. 2001..007). These tests could be of use for the diagnosis of typhoid fever in patients who have clinical typhoid fever but are culture negative or in regions where bacterial culturing facilities are not available...
Acquisition of virulence-associated factors by the enteric pathogens Escherichia coli and Salmonella entericaJ Wain
Centre for Molecular Microbiology and Infection, Imperial College of Science, Technology and Medicine, South Kensington, London W7 2AZ, UK
Philos Trans R Soc Lond B Biol Sci 356:1027-34. 2001..We show how acquisition of DNA at specific sites on the chromosome has contributed to increased genetic variation and virulence of these two genera of the Enterobacteriaceae...
The Escherichia coli gene poolG Dougan
Centre for Molecular Microbiology and Infection, Department of Biochemistry, Imperial College of Science, Technology and Medicine, Exhibition Road, SW7 2AZ, London, UK
Curr Opin Microbiol 4:90-4. 2001..coli to adapt to new environments. These additional genes are often clustered, have related functions (for example, virulence-associated genes in pathogenicity islands) and may be integrated at specific sites on the E. coli chromosome...
Genes of the class II and class III major histocompatibility complex are associated with typhoid fever in VietnamS J Dunstan
Department of Biochemistry, Imperial College of Science, Technology and Medicine, London, SW7 2AZ, United Kingdom
J Infect Dis 183:261-268. 2001..DRB1*04) or predisposed individuals to typhoid fever (TNFA*2 [-308].DRB1*0301) were determined. This report identifies a genetic association in humans between typhoid fever and MHC class II and III genes...
Typhoid fever and genetic polymorphisms at the natural resistance-associated macrophage protein 1S J Dunstan
Department of Biochemistry, Imperial College of Science, Technology and Medicine, London SW7 2AZ, United Kingdom
J Infect Dis 183:1156-60. 2001..No allelic association was identified between the NRAMP1 alleles and typhoid fever susceptibility. In addition, neither homozygotes nor heterozygotes for any NRAMP1 variants were at increased risk of typhoid fever...
Use of paired serum samples for serodiagnosis of typhoid feverDeborah House
Centre for Molecular Microbiology and Infection, Department of Biological Sciences, Imperial College London, South Kensington, UK
J Clin Microbiol 43:4889-90. 2005....
Cytokine release by lipopolysaccharide-stimulated whole blood from patients with typhoid feverDeborah House
Centre for Molecular Microbiology and Infection, Imperial College of Science, Technology, and Medicine, London, United Kingdom
J Infect Dis 186:240-5. 2002..In acute typhoid fever, the ability of peripheral blood leukocytes to release proinflammatory cytokines in response to an inflammatory stimulus is depressed, and this may contribute to delayed recovery following antibiotic treatment...
Unlocking the genome of the human typhoid bacillusJohn Wain
Centre for Molecular Microbiology and Infection, Department of Biological Sciences, Imperial College of Science, Technology, and Medicine, London SW7 2AZ, UK
Lancet Infect Dis 2:163-70. 2002..We have new insights into the mechanisms underpinning the human host specificity of S typhi, and have exploitable new routes to improved diagnostics and a better understanding of the epidemiology of the disease...
A clinical, microbiological, and pathological study of intestinal perforation associated with typhoid feverQuoc Chanh Nguyen
Dong Thap Provincial Hospital, Dong Thap, Ho Chi Minh City, Vietnam
Clin Infect Dis 39:61-7. 2004..Immunohistochemical results showed that the predominant infiltrating cell types at the site of perforation were CD68+ leukocytes (macrophages) or CD3+ leukocytes (T lymphocytes)...
Randomized controlled comparison of ofloxacin, azithromycin, and an ofloxacin-azithromycin combination for treatment of multidrug-resistant and nalidixic acid-resistant typhoid feverChristopher M Parry
Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam
Antimicrob Agents Chemother 51:819-25. 2007..Both antibiotics were well tolerated. Uncomplicated typhoid fever due to isolates of MDR S. enterica serovar Typhi with reduced susceptibility to fluoroquinolones (Na(r)) can be successfully treated with a 7-day course of azithromycin...
Antimicrobial drug resistance of Salmonella enterica serovar typhi in asia and molecular mechanism of reduced susceptibility to the fluoroquinolonesTran Thuy Chau
Oxford University Clinical Research Unit, Hospital for Tropical Diseases, 190 Ben Ham Tu, Ho Chi Minh City, Vietnam
Antimicrob Agents Chemother 51:4315-23. 2007..The 8-methoxy fluoroquinolone gatifloxacin showed rapid killing of serovar Typhi harboring both the single- and double-amino-acid substitutions...
Risk factors for typhoid fever in the Mekong delta, southern Viet Nam: a case-control studyC Luxemburger
Wellcome Trust Clinical Research Unit, Centre for Tropical Diseases, Ho Chi Minh City, Viet Nam
Trans R Soc Trop Med Hyg 95:19-23. 2001..These findings suggest that strategies directed towards the persons in contact with a patient might reduce the incidence of secondary cases of typhoid fever...
Characterisation and distribution of a cryptic Salmonella typhi plasmid pHCM2Claire Kidgell
Centre for Molecular Microbiology and Infection, Department of Biological Sciences, Imperial College of Science, Technology and Medicine, London SW7 2AY, UK
Plasmid 47:159-71. 2002..typhi isolated before, but not after, 1994. Similar pHCM2-related sequences were also detected in S. typhi isolated from other regions of South East Asia and Pakistan but not elsewhere in the world...
Vi antigen expression in Salmonella enterica serovar Typhi clinical isolates from PakistanJohn Wain
Investigative Sciences, Centre for Molecular Microbiology and Infection, Imperial College, London, United Kingdom
J Clin Microbiol 43:1158-65. 2005....
Cases of typhoid fever imported into England, Scotland and Wales (2000-2003)Fiona J Cooke
Health Protection Agency, Centre for Infections, 61 Colindale Avenue, London, UK
Trans R Soc Trop Med Hyg 101:398-404. 2007..This study helps to describe the epidemiology of antimicrobial drug resistance in typhoid fever...
Comparative trial of short-course ofloxacin for uncomplicated typhoid fever in Vietnamese childrenHa Vinh
Hospital for Tropical Diseases, Ho Chi Minh City, Vietnam
Ann Trop Paediatr 25:17-22. 2005..typhi. No adverse events were attributable to the ofloxacin. These results extend previous observations on the efficacy of short courses of ofloxacin for children with uncomplicated multi-drug-resistant typhoid fever...
Typhoid fever: pathogenesis and diseaseD House
Centre for Molecular Microbiology and Infection, Imperial College of Science Technology and Medicine, London, UK
Curr Opin Infect Dis 14:573-8. 2001..In addition, we attempt to put current salmonella research into the context of typhoid fever...
Salmonella typhi, the causative agent of typhoid fever, is approximately 50,000 years oldClaire Kidgell
Centre for Molecular Microbiology and Infection, Imperial College of Science, Technology and Medicine, The Flowers Building, Exhibition Road, South Kensington, London SW7 2AY, UK
Infect Genet Evol 2:39-45. 2002..typhi existed 15,000-150,000 years ago, during the human hunter-gatherer phase and prior to the development of agriculture and the domestication of animals...
Host susceptibility and clinical outcomes in toll-like receptor 5-deficient patients with typhoid fever in VietnamSarah J Dunstan
Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam
J Infect Dis 191:1068-71. 2005..TLR5 may not play an important role in TLR-stimulated innate immune responses to human infection with Salmonella enterica serovar Typhi. Initiation of these responses may rely on other TLRs that recognize different bacterial ligands...
Composition, acquisition, and distribution of the Vi exopolysaccharide-encoding Salmonella enterica pathogenicity island SPI-7Derek Pickard
Centre for Molecular Microbiology and Infection, Department of Biological Sciences, Imperial College of Science, Technology and Medicine, Armstrong Road, London SW7 2AZ, UK
J Bacteriol 185:5055-65. 2003..citri. This analysis suggested that SPI-7 may be a mobile element, such as a conjugative transposon or an integrated plasmid remnant...
Emergence in Vietnam of Streptococcus pneumoniae resistant to multiple antimicrobial agents as a result of dissemination of the multiresistant Spain(23F)-1 cloneChristopher M Parry
Wellcome Trust Clinical Research Unit, Ho Chi Minh City, Vietnam
Antimicrob Agents Chemother 46:3512-7. 2002..Simple clinical predictors can be used to guide empirical antibiotic therapy of meningitis. Pneumococcal vaccination may help to control this problem...
Serodiagnosis of Salmonella enterica serovar Typhi and S. enterica serovars Paratyphi A, B and C human infectionsHenrik Chart
Laboratory of Enteric Pathogens, Department of Gastrointestinal Infections, Centre for Infections, Health Protection Agency, 61 Colindale Avenue, London NW9 5EQ, UK
J Med Microbiol 56:1161-6. 2007..The Salmonella serodiagnosis protocols described here are the new standard operating procedures used by the Health Protection Agency's National Salmonella Reference Centre based in the Laboratory of Enteric Pathogens, Colindale, UK...
Prophage sequences defining hot spots of genome variation in Salmonella enterica serovar Typhimurium can be used to discriminate between field isolatesFiona J Cooke
Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, United Kingdom
J Clin Microbiol 45:2590-8. 2007..These multiplex PCR assays, based on prophage-like elements and Salmonella genomic island 1, provide a simple method for identifying new variants of S. enterica serovar Typhimurium in the field...
Multidrug-resistant Salmonella enterica serovar paratyphi A harbors IncHI1 plasmids similar to those found in serovar typhiKathryn E Holt
Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK
J Bacteriol 189:4257-64. 2007..Our data show that these serovar Typhi and Paratyphi A IncHI1 plasmids share highly conserved core DNA and have acquired similar mobile elements encoding antibiotic resistance genes in past decades...
Emergence of highly fluoroquinolone-resistant Salmonella enterica serovar Typhi in a community-based fever surveillance from Kolkata, IndiaShanta Dutta
Int J Antimicrob Agents 31:387-9. 2008
Evaluation of new-generation serologic tests for the diagnosis of typhoid fever: data from a community-based surveillance in Calcutta, IndiaShanta Dutta
National Institute of Cholera and Enteric Diseases, P-33 CIT Road, Scheme XM, Beliaghata, P.O. Box 177, Calcutta 700010, India
Diagn Microbiol Infect Dis 56:359-65. 2006..There is a need for more efficient rapid diagnostic test for typhoid fever especially during the acute stage of the disease. Until then, culture remains the method of choice...
Fluoroquinolone resistance in Salmonella TyphiFiona J Cooke
BMJ 333:353-4. 2006
The acquisition of full fluoroquinolone resistance in Salmonella Typhi by accumulation of point mutations in the topoisomerase targetsArthur K Turner
The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus Hinxton, Cambridge CB10 1SA, UK
J Antimicrob Chemother 58:733-40. 2006..These results predict that the use of ofloxacin or ciprofloxacin will select for resistance to gatifloxacin in nature...
Molecular analysis of fluoroquinolone-resistant Salmonella Paratyphi A isolate, IndiaSatheesh Nair
The Wellcome Trust Sanger Institute, Cambridgeshire, United Kingdom
Emerg Infect Dis 12:489-91. 2006....
Detection of Vi-negative Salmonella enterica serovar typhi in the peripheral blood of patients with typhoid fever in the Faisalabad region of PakistanStephen Baker
The Wellcome Trust Sanger Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, UK
J Clin Microbiol 43:4418-25. 2005..The method described here can be used to monitor the incidence of Vi-negative serovar Typhi in regions where the Vi vaccine is used...
High-throughput sequencing provides insights into genome variation and evolution in Salmonella TyphiKathryn E Holt
The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK
Nat Genet 40:987-93. 2008..The observed patterns of genetic isolation and drift are consistent with the proposed key role of asymptomatic carriers of Typhi as the main reservoir of this pathogen, highlighting the need for identification and treatment of carriers...
A study of typhoid fever in five Asian countries: disease burden and implications for controlsR Leon Ochiai
International Vaccine Institute, Seoul, Republic of Korea
Bull World Health Organ 86:260-8. 2008..To inform policy-makers about introduction of preventive interventions against typhoid, including vaccination...
The role of prophage-like elements in the diversity of Salmonella enterica serovarsNicholas Thomson
The Pathogen Sequencing Unit, The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, United Kingdom
J Mol Biol 339:279-300. 2004..Lysogenic bacteriophages therefore play a crucial role in the generation of genetic diversity within S.enterica...
Molecular characterization of the Salmonella enterica serovar Typhi Vi-typing bacteriophage E1Derek Pickard
Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, United Kingdom
J Bacteriol 190:2580-7. 2008..The genome of the Vi phage E1 is significantly related to other bacteriophages belonging to the same serovar Typhi phage-typing set, and we demonstrate a role for phage DNA modification in determining host specificity...
Multilocus sequence typing analysis of Shigella flexneri isolates collected in Asian countriesSeon Young Choi
1International Vaccine Institute, San 4 8 Bongcheon 7 Dong, Kwanak gu, Seoul 151 818, Republic of Korea
J Med Microbiol 56:1460-6. 2007..S. flexneri serotypes 1-5, X and Y were clustered together in a group containing many allelic variants while serotype 6 formed a distinct group, as previously established...
Double blind comparison of ibuprofen and paracetamol for adjunctive treatment of uncomplicated typhoid feverHa Vinh
Hospital for Tropical Diseases and University of Oxford-Wellcome Trust Clinical Research Unit, Chi Minh City, Vietnam
Pediatr Infect Dis J 23:226-30. 2004..CONCLUSION: The antipyretic effect of ibuprofen is superior to that of paracetamol in children with typhoid fever, particularly those with prolonged fever. Both antipyretics appeared to be safe...
Enteroaggregative Escherichia coli related to uropathogenic clonal group AFaith Wallace Gadsden
Department of Biology, Haverford College, Haverford, Pennsylvania 19041, USA
Emerg Infect Dis 13:757-60. 2007..coli clonal group A belongs. This finding suggests a recent common ancestor for these distinct groups of pathogenic E. coli...
Salmonella paratyphi A rates, AsiaR Leon Ochiai
International Vaccine Institute, Kwanak PO Box 14, Seoul, South Korea 151 600
Emerg Infect Dis 11:1764-6. 2005..Paratyphi A. We compared their incidences by using standardized methods from population-based studies in China, Indonesia, India, and Pakistan...
Deep-seated resistance in relapsed paratyphoid feverGraham S Cooke
Department of Infectious Diseases, Hammersmith Hospital, London, United Kingdom
Clin Infect Dis 42:e92-4. 2006..18fluorodeoxyglucose positron emission tomography scanning identified deep-seated infection including unsuspected aortitis and highlights the utility of novel imaging techniques to improve our understanding and treatment of this disease...
Isolation of Salmonella enterica subspecies enterica serovar Paratyphi B dT+, or Salmonella Java, from Indonesia and alteration of the d-tartrate fermentation phenotype by disrupting the ORF STM 3356Kyung Ho Han
International Vaccine Institute, San 4 8 Bongcheon 7 Dong, Kwanak gu, Seoul, 151 818, Republic of Korea
J Med Microbiol 55:1661-5. 2006..The results show that the dT+ phenotype requires a functional product encoded by STM 3356, and support the use of the PCR-based discrimination method for S. Paratyphi B and S. Java as the standard differentiation method...
An H-NS-like stealth protein aids horizontal DNA transmission in bacteriaMarie Doyle
Department of Microbiology, Moyne Institute of Preventive Medicine, Trinity College Dublin, Dublin 2, Ireland
Science 315:251-2. 2007..This stealth strategy seems to be used widely to aid horizontal DNA transmission and has important implications for bacterial evolution...
