Ernest Turro

Summary

Affiliation: Imperial College
Country: UK

Publications

  1. pmc BGX: a Bioconductor package for the Bayesian integrated analysis of Affymetrix GeneChips
    Ernest Turro
    Centre for Biostatistics, Imperial College London, UK
    BMC Bioinformatics 8:439. 2007
  2. pmc MMBGX: a method for estimating expression at the isoform level and detecting differential splicing using whole-transcript Affymetrix arrays
    Ernest Turro
    Department of Epidemiology and Public Health, Imperial College London, London, UK
    Nucleic Acids Res 38:e4. 2010
  3. pmc Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads
    Ernest Turro
    Department of Epidemiology and Biostatistics, Imperial College London, Norfolk Place, London, W2 1PG, UK
    Genome Biol 12:R13. 2011
  4. pmc Extensive co-operation between the Epstein-Barr virus EBNA3 proteins in the manipulation of host gene expression and epigenetic chromatin modification
    Robert E White
    Section of Virology, Imperial College London, London, United Kingdom
    PLoS ONE 5:e13979. 2010

Collaborators

Detail Information

Publications4

  1. pmc BGX: a Bioconductor package for the Bayesian integrated analysis of Affymetrix GeneChips
    Ernest Turro
    Centre for Biostatistics, Imperial College London, UK
    BMC Bioinformatics 8:439. 2007
    ..They principally provide a point estimate of gene expression and, in contrast to BGX, do not fully integrate the uncertainty arising from potentially heterogeneous responses of the probes...
  2. pmc MMBGX: a method for estimating expression at the isoform level and detecting differential splicing using whole-transcript Affymetrix arrays
    Ernest Turro
    Department of Epidemiology and Public Health, Imperial College London, London, UK
    Nucleic Acids Res 38:e4. 2010
    ..Finally, we show that our method for detecting differential splicing has a lower error rate than standard exon-level approaches on a previously validated colon cancer data set...
  3. pmc Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads
    Ernest Turro
    Department of Epidemiology and Biostatistics, Imperial College London, Norfolk Place, London, W2 1PG, UK
    Genome Biol 12:R13. 2011
    ..A new statistical method, MMSEQ, deconvolves the mapping of reads to multiple transcripts (isoforms or haplotype-specific isoforms). Our software can take into account non-uniform read generation and works with paired-end reads...
  4. pmc Extensive co-operation between the Epstein-Barr virus EBNA3 proteins in the manipulation of host gene expression and epigenetic chromatin modification
    Robert E White
    Section of Virology, Imperial College London, London, United Kingdom
    PLoS ONE 5:e13979. 2010
    ..Together, this shows the complexity of the interaction between EBV and its host, whereby multiple EBNA3 proteins co-operate to modulate the behaviour of the host cell...