S Jones

Summary

Affiliation: Imperial Cancer Research Fund
Country: UK

Publications

  1. pmc The cohesin complex: sequence homologies, interaction networks and shared motifs
    S Jones
    Computational Genome Analysis Laboratory, Imperial Cancer Research Fund, 44 Lincoln s Inn Fields, London, WC2A 3PX, UK
    Genome Biol 2:RESEARCH0009. 2001
  2. pmc Genetic interactions in yeast between Ypt GTPases and Arf guanine nucleotide exchangers
    S Jones
    Department of Pharmacological and Physiological Sciences, The University of Chicago, Chicago, Illinois 60637, USA
    Genetics 152:1543-56. 1999
  3. ncbi request reprint HTHquery: a method for detecting DNA-binding proteins with a helix-turn-helix structural motif
    C Ferrer-Costa
    Molecular Modelling and Bioinformatics, IRBB Parc Cientific de Barcelona, UB, Josep Samitier, 1 5 08028 Barcelona, Catalonia, Spain
    Bioinformatics 21:3679-80. 2005
  4. pmc Structural requirements for adhesion of soluble recombinant murine vascular cell adhesion molecule-1 to alpha 4 beta 1
    M E Renz
    Department of Immunology, Genentech, Inc, South San Francisco, California 94080
    J Cell Biol 125:1395-406. 1994
  5. ncbi request reprint Dopamine-dependent long term potentiation in the dorsal striatum is reduced in the R6/2 mouse model of Huntington's disease
    V W S Kung
    Department of Physiology, Development and Neuroscience, Anatomy School, University of Cambridge, Downing Street, Cambridge CB2 3DY, UK
    Neuroscience 146:1571-80. 2007
  6. ncbi request reprint The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    G A Tuskan
    Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
    Science 313:1596-604. 2006
  7. pmc A functional genomic analysis of cell morphology using RNA interference
    A A Kiger
    Department of Genetics, Harvard Medical School, Howard Hughes Medical Institute, Boston, MA 02115, USA
    J Biol 2:27. 2003
  8. ncbi request reprint Casein kinase ii (protein kinase ck2) regulates serotonin 5-ht(3) receptor channel function in ng108-15 cells
    S Jones
    Laboratory of Signal Transduction, National Institute of Environmental Health Sciences, National Institutes of Health, Department of Health and Human Services, P O Box 12233, 27709, Research Triangle Park, NC, USA
    Neuroscience 119:629-34. 2003
  9. pmc Protein-RNA interactions: a structural analysis
    S Jones
    Biomolecular Structure and Modelling Unit, Department of Biochemistry and Molecular Biology, University College, Gower Street, London WC1E 6BT, UK
    Nucleic Acids Res 29:943-54. 2001
  10. pmc The TRAPP complex is a nucleotide exchanger for Ypt1 and Ypt31/32
    S Jones
    Department of Biological Sciences, Laboratory for Molecular Biology, University of Illinois at Chicago, Chicago, Illinois 60607, USA
    Mol Biol Cell 11:4403-11. 2000

Collaborators

  • J Leebens-Mack
  • Richard Kahn
  • M Gribskov
  • Hugh P Shanahan
  • Y Van de Peer
  • H M Berman
  • Fei Liu
  • Francis Martin
  • B Baum
  • A W Hemphill
  • V W S Kung
  • G A Tuskan
  • C Ferrer-Costa
  • A A Kiger
  • Y Akkari
  • D Bruun
  • K Hejna
  • J Hejna
  • S B Olson
  • Y Torimaru
  • R E Moses
  • L Thrun
  • P M Jakobs
  • R Hassam
  • A J Morton
  • P M Coutinho
  • A Groover
  • P Richardson
  • D R Nelson
  • S Ralph
  • D Blaudez
  • U Kalluri
  • C Douglas
  • R R Bhalerao
  • F Sterky
  • M Campbell
  • K Ritland
  • D Goodstein
  • A Siddiqui
  • O Nilsson
  • S Degroeve
  • S Lucas
  • V Pereda
  • R P Bhalerao
  • C Kelleher
  • M Marra
  • B Segerman
  • B Hamberger
  • M Jones-Rhoades
  • C Rinaldi
  • A Brun
  • L Gunter
  • A Salamov
  • J Schrader
  • W Huang
  • J Kangasj√§rvi
  • K Nieminen
  • E Uberbacher
  • G Sandberg
  • S Wessler
  • J Ehlting
  • S Jansson
  • Y Lou
  • A Kohler
  • P Unneberg
  • C J Tsai
  • J Chapman
  • A Brunner
  • J Grimwood
  • B Dirks
  • P Locascio
  • B Henrissat
  • S Covert
  • U Hellsten
  • K Wall
  • J Vahala
  • C Nelson
  • S Duplessis
  • J Davis
  • R Kirkpatrick
  • M Chalot
  • C dePamphilis
  • I Grigoriev
  • R Cunningham
  • L Sterck
  • S Difazio
  • J Schmutz
  • B Heinze
  • Q Cronk
  • Y Helariutta

Detail Information

Publications12

  1. pmc The cohesin complex: sequence homologies, interaction networks and shared motifs
    S Jones
    Computational Genome Analysis Laboratory, Imperial Cancer Research Fund, 44 Lincoln s Inn Fields, London, WC2A 3PX, UK
    Genome Biol 2:RESEARCH0009. 2001
    ..The exact function of these proteins is unknown...
  2. pmc Genetic interactions in yeast between Ypt GTPases and Arf guanine nucleotide exchangers
    S Jones
    Department of Pharmacological and Physiological Sciences, The University of Chicago, Chicago, Illinois 60637, USA
    Genetics 152:1543-56. 1999
    ..The genetic interactions observed between Arf GEFs and Ypt GTPases suggest the existence of a Ypt-Arf GTPase cascade in the secretory pathway...
  3. ncbi request reprint HTHquery: a method for detecting DNA-binding proteins with a helix-turn-helix structural motif
    C Ferrer-Costa
    Molecular Modelling and Bioinformatics, IRBB Parc Cientific de Barcelona, UB, Josep Samitier, 1 5 08028 Barcelona, Catalonia, Spain
    Bioinformatics 21:3679-80. 2005
    ..From the training set used, the predictor has a true positive rate of 83.5% and a false positive rate of 0.8%. The emphasis for the website is on providing a straightforward interface which can be easily used by a bench-based scientist...
  4. pmc Structural requirements for adhesion of soluble recombinant murine vascular cell adhesion molecule-1 to alpha 4 beta 1
    M E Renz
    Department of Immunology, Genentech, Inc, South San Francisco, California 94080
    J Cell Biol 125:1395-406. 1994
    ..Although these residues, identified as crucial for cell adhesion, are all located in domain 1, it is evident that there is a structural requirement for domains 1 and 2 to be intact so that cell adhesive function can occur...
  5. ncbi request reprint Dopamine-dependent long term potentiation in the dorsal striatum is reduced in the R6/2 mouse model of Huntington's disease
    V W S Kung
    Department of Physiology, Development and Neuroscience, Anatomy School, University of Cambridge, Downing Street, Cambridge CB2 3DY, UK
    Neuroscience 146:1571-80. 2007
    ..As dopamine-dependent plasticity is a proposed model of striatum-based motor and cognitive functions, this impairment could contribute to deficits seen in R6/2 mice...
  6. ncbi request reprint The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    G A Tuskan
    Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
    Science 313:1596-604. 2006
    ..Overrepresented exceptions in Populus include genes associated with lignocellulosic wall biosynthesis, meristem development, disease resistance, and metabolite transport...
  7. pmc A functional genomic analysis of cell morphology using RNA interference
    A A Kiger
    Department of Genetics, Harvard Medical School, Howard Hughes Medical Institute, Boston, MA 02115, USA
    J Biol 2:27. 2003
    ..With the advent of RNA-interference (RNAi) technology, it is now possible to screen systematically for genes controlling specific cell-biological processes, including those required to generate distinct morphologies...
  8. ncbi request reprint Casein kinase ii (protein kinase ck2) regulates serotonin 5-ht(3) receptor channel function in ng108-15 cells
    S Jones
    Laboratory of Signal Transduction, National Institute of Environmental Health Sciences, National Institutes of Health, Department of Health and Human Services, P O Box 12233, 27709, Research Triangle Park, NC, USA
    Neuroscience 119:629-34. 2003
    ....
  9. pmc Protein-RNA interactions: a structural analysis
    S Jones
    Biomolecular Structure and Modelling Unit, Department of Biochemistry and Molecular Biology, University College, Gower Street, London WC1E 6BT, UK
    Nucleic Acids Res 29:943-54. 2001
    ....
  10. pmc The TRAPP complex is a nucleotide exchanger for Ypt1 and Ypt31/32
    S Jones
    Department of Biological Sciences, Laboratory for Molecular Biology, University of Illinois at Chicago, Chicago, Illinois 60607, USA
    Mol Biol Cell 11:4403-11. 2000
    ..These data suggest the exciting possibility that a GEF complex common to Ypt1 and Ypt31/32 might coordinate the function of these GTPases in entry into and exit from the Golgi...
  11. ncbi request reprint Mucosal addressin cell adhesion molecule-1: a structural and functional analysis demarcates the integrin binding motif
    J L Viney
    Department of Immunology, Genentech, Inc, South San Francisco, CA 94080, USA
    J Immunol 157:2488-97. 1996
    ..These observations suggest that the amino acid residues LDT on MAdCAM-1 play a role in the interaction with alpha 4 beta 7 in cell adherence and cell activation...
  12. pmc Mammalian SNM1 is required for genome stability
    A W Hemphill
    Department of Molecular and Medical Genetics, Oregon Health and Sciences University, 3181 Sam Jackson Park Road, Portland, OR 97239, USA
    Mol Genet Metab 94:38-45. 2008
    ..Further, mono-ubiquitination of FANCD2, an endpoint of the FA pathway, is not disturbed by depletion of hSNM1 in normal cells. Thus, hSNM1 appears to represent a second pathway for genome stability, distinct from the FA pathway...