Clive J Hoggart

Summary

Affiliation: Imperial College
Country: UK

Publications

  1. doi request reprint Genome-wide significance for dense SNP and resequencing data
    Clive J Hoggart
    Department of Epidemiology and Public Health, Imperial College London, Norfolk Place, London, UK
    Genet Epidemiol 32:179-85. 2008
  2. pmc Simultaneous analysis of all SNPs in genome-wide and re-sequencing association studies
    Clive J Hoggart
    Department of Epidemiology and Public Health, Imperial College, London, United Kingdom
    PLoS Genet 4:e1000130. 2008
  3. pmc Fregene: simulation of realistic sequence-level data in populations and ascertained samples
    Marc Chadeau-Hyam
    Department of Epidemiology and Public Health, Imperial College, St Mary s Campus, Norfolk Place, London, W2 1PG, UK
    BMC Bioinformatics 9:364. 2008
  4. pmc Sequence-level population simulations over large genomic regions
    Clive J Hoggart
    Department of Epidemiology and Public Health, Imperial College, London W2 1PG, United Kingdom
    Genetics 177:1725-31. 2007
  5. pmc Genome-wide association study reveals multiple loci associated with primary tooth development during infancy
    Demetris Pillas
    Department of Epidemiology and Public Health, Imperial College London, London, United Kingdom
    PLoS Genet 6:e1000856. 2010
  6. pmc Fine-scale estimation of location of birth from genome-wide single-nucleotide polymorphism data
    Clive J Hoggart
    Department of Epidemiology and Biostatistics, Imperial College, London W2 1PG, United Kingdom
    Genetics 190:669-77. 2012
  7. pmc MultiPhen: joint model of multiple phenotypes can increase discovery in GWAS
    Paul F O'Reilly
    Department of Epidemiology and Biostatistics, Imperial College London, London, United Kingdom
    PLoS ONE 7:e34861. 2012
  8. pmc Control of confounding of genetic associations in stratified populations
    Clive J Hoggart
    Epidemiology Unit, London School of Hygiene and Tropical Medicine, Umited Kingdom
    Am J Hum Genet 72:1492-1504. 2003
  9. pmc Assessing the relative ages of admixture in the bovine hybrid zones of Africa and the Near East using X chromosome haplotype mosaicism
    Abigail R Freeman
    Smurfit Institute of Genetics, Trinity Colege, Dublin, Ireland
    Genetics 173:1503-10. 2006

Detail Information

Publications9

  1. doi request reprint Genome-wide significance for dense SNP and resequencing data
    Clive J Hoggart
    Department of Epidemiology and Public Health, Imperial College London, Norfolk Place, London, UK
    Genet Epidemiol 32:179-85. 2008
    ..We compare our results for sequence data to those derived by the HapMap Consortium and find notable differences which may be due to the small sample sizes used in the HapMap estimate...
  2. pmc Simultaneous analysis of all SNPs in genome-wide and re-sequencing association studies
    Clive J Hoggart
    Department of Epidemiology and Public Health, Imperial College, London, United Kingdom
    PLoS Genet 4:e1000130. 2008
    ....
  3. pmc Fregene: simulation of realistic sequence-level data in populations and ascertained samples
    Marc Chadeau-Hyam
    Department of Epidemiology and Public Health, Imperial College, St Mary s Campus, Norfolk Place, London, W2 1PG, UK
    BMC Bioinformatics 9:364. 2008
    ..We describe here main functionalities of both FREGENE and SAMPLE, a companion program that can replicate association study datasets...
  4. pmc Sequence-level population simulations over large genomic regions
    Clive J Hoggart
    Department of Epidemiology and Public Health, Imperial College, London W2 1PG, United Kingdom
    Genetics 177:1725-31. 2007
    ....
  5. pmc Genome-wide association study reveals multiple loci associated with primary tooth development during infancy
    Demetris Pillas
    Department of Epidemiology and Public Health, Imperial College London, London, United Kingdom
    PLoS Genet 6:e1000856. 2010
    ..Genes at four of the identified loci are implicated in the development of cancer. A variant within the HOXB gene cluster associated with occlusion defects requiring orthodontic treatment by age 31 years...
  6. pmc Fine-scale estimation of location of birth from genome-wide single-nucleotide polymorphism data
    Clive J Hoggart
    Department of Epidemiology and Biostatistics, Imperial College, London W2 1PG, United Kingdom
    Genetics 190:669-77. 2012
    ..A method with such accuracy is potentially valuable in population genetics and forensics...
  7. pmc MultiPhen: joint model of multiple phenotypes can increase discovery in GWAS
    Paul F O'Reilly
    Department of Epidemiology and Biostatistics, Imperial College London, London, United Kingdom
    PLoS ONE 7:e34861. 2012
    ....
  8. pmc Control of confounding of genetic associations in stratified populations
    Clive J Hoggart
    Epidemiology Unit, London School of Hygiene and Tropical Medicine, Umited Kingdom
    Am J Hum Genet 72:1492-1504. 2003
    ..With only 32 markers informative for ancestry, the efficiency of the analysis is 70%. These methods can deal with both confounding and selection bias in genetic-association studies, making family-based designs unnecessary...
  9. pmc Assessing the relative ages of admixture in the bovine hybrid zones of Africa and the Near East using X chromosome haplotype mosaicism
    Abigail R Freeman
    Smurfit Institute of Genetics, Trinity Colege, Dublin, Ireland
    Genetics 173:1503-10. 2006
    ....