David M Aanensen

Summary

Affiliation: Imperial College
Country: UK

Publications

  1. pmc Bayesian semi-supervised classification of bacterial samples using MLST databases
    Lu Cheng
    Department of Mathematics and Statistics, P, O, Box 68, University of Helsinki, 00014, Finland
    BMC Bioinformatics 12:302. 2011
  2. pmc EpiCollect: linking smartphones to web applications for epidemiology, ecology and community data collection
    David M Aanensen
    Department of Infectious Disease Epidemiology, Imperial College London, London, United Kingdom
    PLoS ONE 4:e6968. 2009
  3. pmc The multilocus sequence typing network: mlst.net
    David M Aanensen
    Department of Infectious Disease Epidemiology, Imperial College London, St Mary s Hospital, London W2 1PG, UK
    Nucleic Acids Res 33:W728-33. 2005
  4. pmc Genetic relatedness of the Streptococcus pneumoniae capsular biosynthetic loci
    Angeliki Mavroidi
    Department of Infectious Disease Epidemiology, Imperial College London, Room G22, Old Medical School Building, St Mary s Hospital, Norfolk Place, London W2 1PG, United Kingdom
    J Bacteriol 189:7841-55. 2007
  5. pmc Assigning strains to bacterial species via the internet
    Cynthia J Bishop
    Department of Infectious Disease Epidemiology, Imperial College London, St, Mary s Hospital Campus, London, UK
    BMC Biol 7:3. 2009
  6. ncbi request reprint Changing epidemiologic profile of quinolone-resistant Neisseria gonorrhoeae in London
    Iona M C Martin
    Department of Infectious Diseases and Microbiology, Imperial College London, St Mary s Campus, London, United Kingdom
    J Infect Dis 192:1191-5. 2005
  7. pmc Predicted functions and linkage specificities of the products of the Streptococcus pneumoniae capsular biosynthetic loci
    David M Aanensen
    Department of Infectious Disease Epidemiology, Imperial College London, Room G22, Old Medical School Building, St Mary s Hospital, Norfolk Place, London W2 1PG, United Kingdom
    J Bacteriol 189:7856-76. 2007
  8. ncbi request reprint Displaying the relatedness among isolates of bacterial species -- the eBURST approach
    Brian G Spratt
    Department of Infectious Disease Epidemiology, Faculty of Medicine, Imperial College London, St Mary s Hospital, Old Medical School Building, London W2 1PG, UK
    FEMS Microbiol Lett 241:129-34. 2004
  9. pmc Evolutionary genetics of the capsular locus of serogroup 6 pneumococci
    Angeliki Mavroidi
    Department of Infectious Disease Epidemiology, Imperial College London, Room G22, Old Medical School Building, St Mary s Hospital, Norfolk Place, London W2 1PG, United Kingdom
    J Bacteriol 186:8181-92. 2004
  10. ncbi request reprint Rapid sequence-based identification of gonococcal transmission clusters in a large metropolitan area
    Iona M C Martin
    Department of Infectious Diseases and Microbiology, Imperial College London, St Mary s Campus, London, United
    J Infect Dis 189:1497-505. 2004

Collaborators

Detail Information

Publications16

  1. pmc Bayesian semi-supervised classification of bacterial samples using MLST databases
    Lu Cheng
    Department of Mathematics and Statistics, P, O, Box 68, University of Helsinki, 00014, Finland
    BMC Bioinformatics 12:302. 2011
    ..When combined with the existing metadata, such subsets may provide invaluable information for assessing the position of a new set of isolates in relation to the whole pathogen population...
  2. pmc EpiCollect: linking smartphones to web applications for epidemiology, ecology and community data collection
    David M Aanensen
    Department of Infectious Disease Epidemiology, Imperial College London, London, United Kingdom
    PLoS ONE 4:e6968. 2009
    ....
  3. pmc The multilocus sequence typing network: mlst.net
    David M Aanensen
    Department of Infectious Disease Epidemiology, Imperial College London, St Mary s Hospital, London W2 1PG, UK
    Nucleic Acids Res 33:W728-33. 2005
    ..This network of MLST websites is available at http://www.mlst.net...
  4. pmc Genetic relatedness of the Streptococcus pneumoniae capsular biosynthetic loci
    Angeliki Mavroidi
    Department of Infectious Disease Epidemiology, Imperial College London, Room G22, Old Medical School Building, St Mary s Hospital, Norfolk Place, London W2 1PG, United Kingdom
    J Bacteriol 189:7841-55. 2007
    ....
  5. pmc Assigning strains to bacterial species via the internet
    Cynthia J Bishop
    Department of Infectious Disease Epidemiology, Imperial College London, St, Mary s Hospital Campus, London, UK
    BMC Biol 7:3. 2009
    ....
  6. ncbi request reprint Changing epidemiologic profile of quinolone-resistant Neisseria gonorrhoeae in London
    Iona M C Martin
    Department of Infectious Diseases and Microbiology, Imperial College London, St Mary s Campus, London, United Kingdom
    J Infect Dis 192:1191-5. 2005
    ..In London, quinolone resistance is no longer associated with importation from areas of high prevalence and is spreading endemically in high-risk groups...
  7. pmc Predicted functions and linkage specificities of the products of the Streptococcus pneumoniae capsular biosynthetic loci
    David M Aanensen
    Department of Infectious Disease Epidemiology, Imperial College London, Room G22, Old Medical School Building, St Mary s Hospital, Norfolk Place, London W2 1PG, United Kingdom
    J Bacteriol 189:7856-76. 2007
    ..These assignments should provide a stimulus for biochemical studies to evaluate the reactions that are proposed...
  8. ncbi request reprint Displaying the relatedness among isolates of bacterial species -- the eBURST approach
    Brian G Spratt
    Department of Infectious Disease Epidemiology, Faculty of Medicine, Imperial College London, St Mary s Hospital, Old Medical School Building, London W2 1PG, UK
    FEMS Microbiol Lett 241:129-34. 2004
    ..We discuss the advantages of this approach and describe its use to explore patterns of descent within clonal complexes identified using multilocus sequence typing...
  9. pmc Evolutionary genetics of the capsular locus of serogroup 6 pneumococci
    Angeliki Mavroidi
    Department of Infectious Disease Epidemiology, Imperial College London, Room G22, Old Medical School Building, St Mary s Hospital, Norfolk Place, London W2 1PG, United Kingdom
    J Bacteriol 186:8181-92. 2004
    ....
  10. ncbi request reprint Rapid sequence-based identification of gonococcal transmission clusters in a large metropolitan area
    Iona M C Martin
    Department of Infectious Diseases and Microbiology, Imperial College London, St Mary s Campus, London, United
    J Infect Dis 189:1497-505. 2004
    ....
  11. ncbi request reprint WebACT: an online genome comparison suite
    James C Abbott
    Centre for Bioinformatics, Imperial College London, UK
    Methods Mol Biol 395:57-74. 2007
    ..The use of ACT to view the selected comparison is then explored using examples from bacterial genomes...
  12. pmc Low diversity Cryptococcus neoformans variety grubii multilocus sequence types from Thailand are consistent with an ancestral African origin
    Sitali P Simwami
    Department of Infectious Disease Epidemiology, Faculty of Medicine, Imperial College London, London, United Kingdom
    PLoS Pathog 7:e1001343. 2011
    ..96 - 27,177.76). Further high-density sampling of global Cng STs is now necessary to resolve the temporal sequence underlying the global emergence of this human pathogen...
  13. pmc Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei
    Daniel Godoy
    Department of Infectious Disease Epidemiology, Faculty of Medicine, Imperial College London, St Mary s Hospital, London W2 1PG, United Kingdom
    J Clin Microbiol 41:2068-79. 2003
    ..Alleles at six of the seven loci in B. mallei were also present within B. pseudomallei isolates, and B. mallei is a clone of B. pseudomallei that, on population genetics grounds, should not be given separate species status...
  14. pmc eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data
    Edward J Feil
    Department of Biology and Biochemistry, University of Bath, Claverton Down, Bath BA2 7AY, United Kingdom
    J Bacteriol 186:1518-30. 2004
    ..pneumoniae and Staphylococcus aureus MLST databases, and the more complicated clonal complexes observed for Campylobacter jejuni and Neisseria meningitidis...
  15. ncbi request reprint Multilocus sequence typing of Candida albicans: strategies, data exchange and applications
    Marie Elisabeth Bougnoux
    Unité Postulante Biologie et Pathogénicité Fongiques, USC INRA 2019, Institut Pasteur, 25 rue du Docteur Roux, 75724 Paris Cedex 15, France
    Infect Genet Evol 4:243-52. 2004
    ..albicans are available in a public database (http://calbicans.mlst.net) that provides a new resource to evaluate the worldwide diversity of C. albicans and the relationships of isolates identified at various locations...
  16. pmc MLST of housekeeping genes captures geographic population structure and suggests a European origin of Borrelia burgdorferi
    Gabriele Margos
    Departments of Biology and Biochemistry and Mathematical Sciences, University of Bath, Bath BA2 7AY, United Kingdom
    Proc Natl Acad Sci U S A 105:8730-5. 2008
    ..burgdorferi correspond to genetically distinct populations. Importantly, the MLST data suggest that B. burgdorferi originated in Europe rather than in North America as proposed previously...