Raoul J Bino

Summary

Affiliation: Wageningen University
Country: The Netherlands

Publications

  1. pmc A novel approach for nontargeted data analysis for metabolomics. Large-scale profiling of tomato fruit volatiles
    Yury Tikunov
    Centre for BioSystems Genomics, 6700 AB Wageningen, The Netherlands
    Plant Physiol 139:1125-37. 2005
  2. ncbi request reprint Potential of metabolomics as a functional genomics tool
    Raoul J Bino
    Plant Physiology Department, Wageningen University, Arboretumlaan 4, 6703 BD Wageningen, The Netherlands
    Trends Plant Sci 9:418-25. 2004
  3. ncbi request reprint The light-hyperresponsive high pigment-2dg mutation of tomato: alterations in the fruit metabolome
    Raoul J Bino
    Plant Research International, POB 16, 6700 AA Wageningen, The Netherlands
    New Phytol 166:427-38. 2005
  4. ncbi request reprint Tissue specialization at the metabolite level is perceived during the development of tomato fruit
    Sofia Moco
    Laboratory of Biochemistry, Wageningen University, Dreijenlaan 3, 6703 HA, Wageningen, The Netherlands
    J Exp Bot 58:4131-46. 2007
  5. doi request reprint Carotenoid and fatty acid metabolism in nitrogen-starved Dunaliella salina, a unicellular green microalga
    Packo P Lamers
    Bioprocess Engineering, Wageningen University, P O Box 8129, 6700 EV Wageningen, The Netherlands
    J Biotechnol 162:21-7. 2012
  6. doi request reprint Automatic chemical structure annotation of an LC-MS(n) based metabolic profile from green tea
    Lars Ridder
    Laboratory of Biochemistry, Wageningen University, Dreijenlaan 3, 6703 HA Wageningen, The Netherlands
    Anal Chem 85:6033-40. 2013
  7. pmc A liquid chromatography-mass spectrometry-based metabolome database for tomato
    Sofia Moco
    Laboratory of Biochemistry, Wageningen University, 6703 HA Wageningen, The Netherlands
    Plant Physiol 141:1205-18. 2006
  8. ncbi request reprint In silico prediction and automatic LC-MS(n) annotation of green tea metabolites in urine
    Lars Ridder
    Laboratory of Biochemistry, Wageningen University, Dreijenlaan 3, 6703 HA, Wageningen, The Netherlands
    Anal Chem 86:4767-74. 2014
  9. doi request reprint Structural elucidation and quantification of phenolic conjugates present in human urine after tea intake
    Justin J J van der Hooft
    Laboratory of Biochemistry, Wageningen University, Dreijenlaan 3, 6703 HA, Wageningen, The Netherlands
    Anal Chem 84:7263-71. 2012
  10. ncbi request reprint Carotenoid and fatty acid metabolism in light-stressed Dunaliella salina
    Packo P Lamers
    Wageningen University, Bioprocess Engineering, P O Box 8129, 6700 EV Wageningen, The Netherlands
    Biotechnol Bioeng 106:638-48. 2010

Collaborators

Detail Information

Publications20

  1. pmc A novel approach for nontargeted data analysis for metabolomics. Large-scale profiling of tomato fruit volatiles
    Yury Tikunov
    Centre for BioSystems Genomics, 6700 AB Wageningen, The Netherlands
    Plant Physiol 139:1125-37. 2005
    ..The approach chosen will further enhance the comprehensiveness of GC-MS-based metabolomics approaches and will therefore prove a useful addition to nontargeted functional genomics research...
  2. ncbi request reprint Potential of metabolomics as a functional genomics tool
    Raoul J Bino
    Plant Physiology Department, Wageningen University, Arboretumlaan 4, 6703 BD Wageningen, The Netherlands
    Trends Plant Sci 9:418-25. 2004
  3. ncbi request reprint The light-hyperresponsive high pigment-2dg mutation of tomato: alterations in the fruit metabolome
    Raoul J Bino
    Plant Research International, POB 16, 6700 AA Wageningen, The Netherlands
    New Phytol 166:427-38. 2005
    ..The similarity in metabolic alterations in fruits of hp-1 and hp-2 mutant plants helps us to understand how hp mutations affect cellular processes...
  4. ncbi request reprint Tissue specialization at the metabolite level is perceived during the development of tomato fruit
    Sofia Moco
    Laboratory of Biochemistry, Wageningen University, Dreijenlaan 3, 6703 HA, Wageningen, The Netherlands
    J Exp Bot 58:4131-46. 2007
    ..These findings suggest spatio-temporal specificity in the accumulation of endogenous metabolites from tomato fruit...
  5. doi request reprint Carotenoid and fatty acid metabolism in nitrogen-starved Dunaliella salina, a unicellular green microalga
    Packo P Lamers
    Bioprocess Engineering, Wageningen University, P O Box 8129, 6700 EV Wageningen, The Netherlands
    J Biotechnol 162:21-7. 2012
    ....
  6. doi request reprint Automatic chemical structure annotation of an LC-MS(n) based metabolic profile from green tea
    Lars Ridder
    Laboratory of Biochemistry, Wageningen University, Dreijenlaan 3, 6703 HA Wageningen, The Netherlands
    Anal Chem 85:6033-40. 2013
    ..Twenty-four additional components were putatively identified by expert interpretation of the automatically annotated data set, illustrating the potential to support systematic and untargeted metabolite identification...
  7. pmc A liquid chromatography-mass spectrometry-based metabolome database for tomato
    Sofia Moco
    Laboratory of Biochemistry, Wageningen University, 6703 HA Wageningen, The Netherlands
    Plant Physiol 141:1205-18. 2006
    ....
  8. ncbi request reprint In silico prediction and automatic LC-MS(n) annotation of green tea metabolites in urine
    Lars Ridder
    Laboratory of Biochemistry, Wageningen University, Dreijenlaan 3, 6703 HA, Wageningen, The Netherlands
    Anal Chem 86:4767-74. 2014
    ....
  9. doi request reprint Structural elucidation and quantification of phenolic conjugates present in human urine after tea intake
    Justin J J van der Hooft
    Laboratory of Biochemistry, Wageningen University, Dreijenlaan 3, 6703 HA, Wageningen, The Netherlands
    Anal Chem 84:7263-71. 2012
    ....
  10. ncbi request reprint Carotenoid and fatty acid metabolism in light-stressed Dunaliella salina
    Packo P Lamers
    Wageningen University, Bioprocess Engineering, P O Box 8129, 6700 EV Wageningen, The Netherlands
    Biotechnol Bioeng 106:638-48. 2010
    ..Our results indicate that cellular beta-carotene accumulation in D. salina correlates with accumulation of specific fatty acid species (C16:0 and C18:1) rather than with total fatty acid content...
  11. ncbi request reprint Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry
    Ric C H De Vos
    Plant Research International, Wageningen University and Research Centre Wageningen UR, PO Box 16, 6700 AA Wageningen, The Netherlands
    Nat Protoc 2:778-91. 2007
    ..The complete procedure from metabolite extraction to assembly of a data matrix with aligned mass signal intensities takes about 6 days for 50 samples...
  12. doi request reprint A strategy for fast structural elucidation of metabolites in small volume plant extracts using automated MS-guided LC-MS-SPE-NMR
    Justin J J van der Hooft
    Laboratory of Biochemistry, Wageningen University, Wageningen, The Netherlands
    Magn Reson Chem 49:S55-60. 2011
    ..Our approach facilitates the more rapid unraveling of yet unknown metabolite structures and can therefore make untargeted metabolomics approaches more powerful...
  13. doi request reprint Metabolite biodiversity in pepper (Capsicum) fruits of thirty-two diverse accessions: variation in health-related compounds and implications for breeding
    Yuni Wahyuni
    Plant Research International, 6700 AA Wageningen, The Netherlands
    Phytochemistry 72:1358-70. 2011
    ....
  14. ncbi request reprint A comparative study on the effect of algal and fish oil on viability and cell proliferation of Caco-2 cells
    Vincent A van Beelen
    Division of Toxicology, Wageningen University and Research Center, Wageningen, The Netherlands
    Food Chem Toxicol 45:716-24. 2007
    ..The results of the present study support a similar mode of action of algal oil and fish oil on cancer cells in vitro, in spite of their different PUFA content...
  15. doi request reprint Polyphenol identification based on systematic and robust high-resolution accurate mass spectrometry fragmentation
    Justin J J van der Hooft
    Laboratory of Biochemistry, Wageningen University, Dreijenlaan 3, 6703 HA, Wageningen, The Netherlands
    Anal Chem 83:409-16. 2011
    ..Accurate MS(n)-based spectral tree data are therefore a powerful tool to distinguish metabolites with similar elemental formula, thereby assisting compound identification in complex biological samples such as crude plant extracts...
  16. ncbi request reprint The genetics of plant metabolism
    Joost J B Keurentjes
    Laboratory of Genetics, Wageningen University, Arboretumlaan 4, NL 6703 BD Wageningen, The Netherlands
    Nat Genet 38:842-9. 2006
    ..More than one-third of the signals were not detected in either parent, indicating the large potential for modification of metabolic composition through classical breeding...
  17. doi request reprint Exploring and exploiting carotenoid accumulation in Dunaliella salina for cell-factory applications
    Packo P Lamers
    Wageningen University, Department Agrotechnology and Food Sciences, 6700 EV Wageningen, The Netherlands
    Trends Biotechnol 26:631-8. 2008
    ..Ultimately, a better understanding of the regulatory mechanisms involved in beta-carotene overproduction will facilitate innovative production of specific carotenoids and other products in D. salina and in related organisms...
  18. ncbi request reprint Alignment and statistical difference analysis of complex peptide data sets generated by multidimensional LC-MS
    Antoine H P America
    Plant Research International, Wageningen, The Netherlands
    Proteomics 6:641-53. 2006
    ..Our approach is a highly sensitive method to analyze proteins in complex mixtures without the need of isotope labeling...
  19. pmc Gene expression programs during Brassica oleracea seed maturation, osmopriming, and germination are indicators of progression of the germination process and the stress tolerance level
    Yasutaka Soeda
    Plant Research International B V, 6700 AA Wageningen, The Netherlands
    Plant Physiol 137:354-68. 2005
    ..Germination-related gene expression was found to be partially reversible by physiological treatments such as slow drying of osmoprimed seeds. This correlated to the ability of seeds to withstand stress...
  20. ncbi request reprint A proposed framework for the description of plant metabolomics experiments and their results
    Helen Jenkins
    Department of Computer Science, University of Wales, Penglais, Aberystwyth, Ceredigion, Wales, UK
    Nat Biotechnol 22:1601-6. 2004
    ..armet.org/). We seek to advance discussion and community adoption of a standard for metabolomics, which would promote principled collection, storage and transmission of experiment data...