S A Kooijman

Summary

Affiliation: Vrije Universiteit
Country: The Netherlands

Publications

  1. ncbi Yolky eggs prepare for metabolic acceleration
    S A L M Kooijman
    Department of Theoretical Biology, Vrije Universiteit, Amsterdam, The Netherlands
    J Math Biol 66:795-805. 2013
  2. ncbi Quantitative steps in symbiogenesis and the evolution of homeostasis
    S A L M Kooijman
    Department of Theoretical Biology, Institute of Ecological Science, Vrije Universiteit, De Boelelaan 1087, 1081 HV Amsterdam, The Netherlands
    Biol Rev Camb Philos Soc 78:435-63. 2003
  3. ncbi The relationship between elimination rates and partition coefficients
    S A L M Kooijman
    Department of Theoretical Biology, Faculty of Earth and Life Sciences, Vrije Universiteit, De Boelelaan 1087, 1081 HV Amsterdam, Netherlands
    Chemosphere 57:745-53. 2004
  4. ncbi How growth affects the fate of cellular metabolites
    S A L M Kooijman
    Department of Theoretical Biology, Faculty of Earth and Life Sciences, Vrije Universiteit, De Boelelaan 1087, 1081 HV Amsterdam, Netherlands
    Bull Math Biol 67:57-77. 2005
  5. ncbi Quantitative steps in the evolution of metabolic organisation as specified by the Dynamic Energy Budget theory
    S A L M Kooijman
    Department of Theoretical Biology Vrije Universiteit, De Boelelaan 1087, 1081 HV Amsterdam, The Netherlands
    Biol Rev Camb Philos Soc 82:113-42. 2007
  6. ncbi Scaling relationships based on partition coefficients and body sizes have similarities and interactions
    S A L M Kooijman
    Faculty Earth and Life Sciences, Vrije Universiteit, 1081 HV, Amsterdam, The Netherlands
    SAR QSAR Environ Res 18:315-30. 2007
  7. ncbi A new class of non-linear stochastic population models with mass conservation
    S A L M Kooijman
    Department of Theoretical Biology, Vrije Universiteit, De Boelelaan 1087, 1081 HV, Amsterdam, The Netherlands
    Math Biosci 210:378-94. 2007
  8. ncbi What the egg can tell about its hen: embryonic development on the basis of dynamic energy budgets
    S A L M Kooijman
    Department of Theoretical Biology, Vrije Universiteit, De Boelelaan 1087, 1081 HV, Amsterdam, The Netherlands
    J Math Biol 58:377-94. 2009
  9. ncbi From food-dependent statistics to metabolic parameters, a practical guide to the use of dynamic energy budget theory
    S A L M Kooijman
    Department of Theoretical Biology, Vrije Universiteit, De Boelelaan 1087, 1081 HV Amsterdam, The Netherlands
    Biol Rev Camb Philos Soc 83:533-52. 2008
  10. ncbi Light-induced mass turnover in a mono-species community of mixotrophs
    S A L M Kooijman
    Department of Theoretical Biology, Institute of Ecological Science, Vrije Universiteit, De Boelelaan 1087, 1081 HV Amsterdam, The Netherlands
    J Theor Biol 214:233-54. 2002

Collaborators

Detail Information

Publications21

  1. ncbi Yolky eggs prepare for metabolic acceleration
    S A L M Kooijman
    Department of Theoretical Biology, Vrije Universiteit, Amsterdam, The Netherlands
    J Math Biol 66:795-805. 2013
    ..These parameters have been used to quantify yolkiness and metabolic acceleration and a clear proportionality relationship resulted. I present some suggestions for explanations in the context of life histories...
  2. ncbi Quantitative steps in symbiogenesis and the evolution of homeostasis
    S A L M Kooijman
    Department of Theoretical Biology, Institute of Ecological Science, Vrije Universiteit, De Boelelaan 1087, 1081 HV Amsterdam, The Netherlands
    Biol Rev Camb Philos Soc 78:435-63. 2003
    ....
  3. ncbi The relationship between elimination rates and partition coefficients
    S A L M Kooijman
    Department of Theoretical Biology, Faculty of Earth and Life Sciences, Vrije Universiteit, De Boelelaan 1087, 1081 HV Amsterdam, Netherlands
    Chemosphere 57:745-53. 2004
    ..The daphnia data showed less scatter than the fish data, possibly due to the small variance in body sizes, since elimination rates are inversely proportional to body length. The square root relationship fitted these data best...
  4. ncbi How growth affects the fate of cellular metabolites
    S A L M Kooijman
    Department of Theoretical Biology, Faculty of Earth and Life Sciences, Vrije Universiteit, De Boelelaan 1087, 1081 HV Amsterdam, Netherlands
    Bull Math Biol 67:57-77. 2005
    ..atp...
  5. ncbi Quantitative steps in the evolution of metabolic organisation as specified by the Dynamic Energy Budget theory
    S A L M Kooijman
    Department of Theoretical Biology Vrije Universiteit, De Boelelaan 1087, 1081 HV Amsterdam, The Netherlands
    Biol Rev Camb Philos Soc 82:113-42. 2007
    ..We argue that the evolution of demand systems can only be understood in the light of that of supply systems. We illustrate some important points with data from the literature...
  6. ncbi Scaling relationships based on partition coefficients and body sizes have similarities and interactions
    S A L M Kooijman
    Faculty Earth and Life Sciences, Vrije Universiteit, 1081 HV, Amsterdam, The Netherlands
    SAR QSAR Environ Res 18:315-30. 2007
    ..The strength of the theory is in the combination of why metabolic transformation depends both on the BCF and the body size. We illustrate the application of the theory with several data sets from the literature...
  7. ncbi A new class of non-linear stochastic population models with mass conservation
    S A L M Kooijman
    Department of Theoretical Biology, Vrije Universiteit, De Boelelaan 1087, 1081 HV, Amsterdam, The Netherlands
    Math Biosci 210:378-94. 2007
    ..For total nutrient values below the focus bifurcation point, the system gradually becomes more confined to the direct neighbourhood of the isocline for which the producers do not change...
  8. ncbi What the egg can tell about its hen: embryonic development on the basis of dynamic energy budgets
    S A L M Kooijman
    Department of Theoretical Biology, Vrije Universiteit, De Boelelaan 1087, 1081 HV, Amsterdam, The Netherlands
    J Math Biol 58:377-94. 2009
    ..They can also decrease the egg size, however, such that the reproduction rate is stimulated at low concentrations. The present theory offers a possible explanation for this well-known phenomenon...
  9. ncbi From food-dependent statistics to metabolic parameters, a practical guide to the use of dynamic energy budget theory
    S A L M Kooijman
    Department of Theoretical Biology, Vrije Universiteit, De Boelelaan 1087, 1081 HV Amsterdam, The Netherlands
    Biol Rev Camb Philos Soc 83:533-52. 2008
    ..We illustrate the methods using data on daphnids and molluscs...
  10. ncbi Light-induced mass turnover in a mono-species community of mixotrophs
    S A L M Kooijman
    Department of Theoretical Biology, Institute of Ecological Science, Vrije Universiteit, De Boelelaan 1087, 1081 HV Amsterdam, The Netherlands
    J Theor Biol 214:233-54. 2002
    ..Depth profiles are presented for the implied steady-state concentrations of dissolved inorganic carbon and nitrogen...
  11. ncbi Quantitative aspects of metabolic organization: a discussion of concepts
    S A Kooijman
    Department ofTheoretical Biology, Institute of Ecological Science, Vrije Universiteit, Amsterdam, The Netherlands
    Philos Trans R Soc Lond B Biol Sci 356:331-49. 2001
    ..Strong and weak homeostasis and the partitionability of reserve kinetics are cornerstones of the theory and essential for understanding the evolution of metabolic organization...
  12. ncbi Food chain dynamics in the chemostat
    M P Boer
    Department of Theoretical Biology, Vrije Universiteit Amsterdam, The Netherlands
    Math Biosci 150:43-62. 1998
    ..It is shown that low as well as high concentration of input substrate can lead to extinction of the highest trophic level...
  13. ncbi Consequences of population models for the dynamics of food chains
    B W Kooi
    Faculty of Biology, Free University, Amsterdam, The Netherlands
    Math Biosci 153:99-124. 1998
    ..Although the predicted transient dynamics of a food chain may depend sensitively on the underlying model for the populations, the global picture of the bifurcation diagram for the different models is about the same...
  14. ncbi Resistance of a food chain to invasion by a top predator
    B W Kooi
    Faculty of Biology, Free University, Amsterdam, The Netherlands
    Math Biosci 157:217-36. 1999
    ..This may enable short food chains to be resistant to invaders. We will relate these results to ecological community assembly and the debate on the length of food chains in nature...
  15. ncbi Discrete event versus continuous approach to reproduction in structured population dynamics
    B W Kooi
    Biological Laboratory, Free University, De Boelelaan, Amsterdam, 1081 HV, The Netherlands
    Theor Popul Biol 56:91-105. 1999
    ..Unlike the continuous reproduction model, the discrete model captures the experimentally observed lack of egg production shortly after the step change in the dilution rate of the chemostat...
  16. ncbi The role of intracellular components in food chain dynamics
    P P Hanegraaf
    Faculty of Biology, Department of Theoretical Biology, Vrije Universiteit Amsterdam, The Netherlands
    C R Acad Sci III 323:99-111. 2000
    ..The model is not too complicated to be of use in the study of food webs. The consequences of the presence of intracellular components in a food web on its long-term dynamics are investigated with bifurcation analysis...
  17. ncbi Iteroparous reproduction strategies and population dynamics
    B W Kooi
    Department of Theoretical Biology, Vrije Universiteit, Amsterdam, The Netherlands
    Bull Math Biol 63:769-94. 2001
    ..The applicability in ecotoxicology of the population matrix model formulation for iteroparous populations is discussed...
  18. ncbi A mathematical model for yeast respiro-fermentative physiology
    P P Hanegraaf
    Faculty of Biology, Vrije Universiteit Amsterdam, De Boelelaan 1087, 1082 HV Amsterdam, The Netherlands
    Yeast 16:423-37. 2000
    ..The present theory is not designed exclusively for the phenomenon of respiro-fermentative physiology: it describes the degradation of substances by heterotrophic micro-organisms in general...
  19. ncbi Two parameters account for the flocculated growth of microbes in biodegradation assays
    B W Brandt
    Department of Theoretical Biology, Institute of Ecological Science, Faculty of Biology, Vrije Universiteit, De Boelelaan 1087, 1081 HV Amsterdam, The Netherlands
    Biotechnol Bioeng 70:677-84. 2000
    ..The results can be applied in realistic biodegradation quantifications in activated sludge tanks as long as substrate concentrations change slowly...
  20. ncbi Multiple attractors and boundary crises in a tri-trophic food chain
    M P Boer
    Department of Theoretical Biology, Faculty of Biology, Institute of Ecological Science, Vrije Universiteit, De Boelelaan 1087, 1081 HV, Amsterdam, The Netherlands
    Math Biosci 169:109-28. 2001
    ..For a tri-trophic food chain enrichment of the environment can even lead to extinction of the highest trophic level...
  21. ncbi Analysis of bioassays with time-varying concentrations
    A R Péry
    Laboratoire d Ecotoxicologie, Cemagref, Lyon, France
    Water Res 35:3825-32. 2001
    ..This approach does not require any kinetics assumption. Computer simulation and experimental data confirm the relevance of the different proposals...