Remus Th Dame

Summary

Affiliation: Vrije Universiteit
Country: The Netherlands

Publications

  1. ncbi request reprint Insights into the regulation of transcription by scanning force microscopy
    R T Dame
    Physics of Complex Systems, Department of Physics and Astronomy, Free University of Amsterdam, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands
    J Microsc 212:244-53. 2003
  2. pmc DNA bridging: a property shared among H-NS-like proteins
    Remus T Dame
    Physics of Complex Systems, Department of Physics and Astronomy, Vrije Universiteit, De Boelelaan 1081, NL 1081 HV Amsterdam, The Netherlands
    J Bacteriol 187:1845-8. 2005
  3. pmc Analysis of scanning force microscopy images of protein-induced DNA bending using simulations
    Remus T Dame
    Physics of Complex Systems, Department of Physics and Astronomy, Faculty of Sciences, Vrije Universiteit De Boelelaan 1081, NL 1081 HV, Amsterdam, The Netherlands
    Nucleic Acids Res 33:e68. 2005
  4. ncbi request reprint The role of nucleoid-associated proteins in the organization and compaction of bacterial chromatin
    Remus T Dame
    Physics of Complex Systems, Department of Physics and Astronomy, Faculty of Sciences, Vrije Universiteit, Amsterdam, The Netherlands
    Mol Microbiol 56:858-70. 2005
  5. doi request reprint Single-molecule micromanipulation studies of DNA and architectural proteins
    Remus Th Dame
    Department of Physics and Astronomy and Laser Centre, VU University Amsterdam, Amsterdam, The Netherlands
    Biochem Soc Trans 36:732-7. 2008
  6. ncbi request reprint The architectural role of nucleoid-associated proteins in the organization of bacterial chromatin: a molecular perspective
    Martijn S Luijsterburg
    Department of Physics and Astronomy, Faculty of Sciences, Vrije Universiteit, Amsterdam, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands
    J Struct Biol 156:262-72. 2006
  7. ncbi request reprint The major architects of chromatin: architectural proteins in bacteria, archaea and eukaryotes
    Martijn S Luijsterburg
    Swammerdam Institute for Life Sciences, University of Amsterdam, Kruislaan, Amsterdam, The Netherlands
    Crit Rev Biochem Mol Biol 43:393-418. 2008
  8. ncbi request reprint Bacterial chromatin organization by H-NS protein unravelled using dual DNA manipulation
    Remus T Dame
    Department of Physics and Astronomy and Laser Centre, Vrije Universiteit, De Boelelaan 1081, 1081 HV, Amsterdam, The Netherlands
    Nature 444:387-90. 2006
  9. pmc Predicting the effect of ions on the conformation of the H-NS dimerization domain
    Jocelyne Vreede
    Computational Chemistry, van t Hoff Institute for Molecular Sciences, University of Amsterdam, Amsterdam, The Netherlands
    Biophys J 103:89-98. 2012

Collaborators

Detail Information

Publications9

  1. ncbi request reprint Insights into the regulation of transcription by scanning force microscopy
    R T Dame
    Physics of Complex Systems, Department of Physics and Astronomy, Free University of Amsterdam, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands
    J Microsc 212:244-53. 2003
    ..In this article an overview is given of SFM studies addressing, in particular, topics in the field of transcription in prokaryotic organisms...
  2. pmc DNA bridging: a property shared among H-NS-like proteins
    Remus T Dame
    Physics of Complex Systems, Department of Physics and Astronomy, Vrije Universiteit, De Boelelaan 1081, NL 1081 HV Amsterdam, The Netherlands
    J Bacteriol 187:1845-8. 2005
    ..Homologues, often with very low sequence identity, are found in most gram-negative bacteria. Microscopic analysis reveals that, despite limited sequence identity, their structural organization results in similar DNA binding properties...
  3. pmc Analysis of scanning force microscopy images of protein-induced DNA bending using simulations
    Remus T Dame
    Physics of Complex Systems, Department of Physics and Astronomy, Faculty of Sciences, Vrije Universiteit De Boelelaan 1081, NL 1081 HV, Amsterdam, The Netherlands
    Nucleic Acids Res 33:e68. 2005
    ..In this manner, we were able to obtain accurate estimates for the bending angles induced by nuclear factor I, octamer-binding transcription factor 1, the human XPC-Rad23B complex and integration host factor [correction]..
  4. ncbi request reprint The role of nucleoid-associated proteins in the organization and compaction of bacterial chromatin
    Remus T Dame
    Physics of Complex Systems, Department of Physics and Astronomy, Faculty of Sciences, Vrije Universiteit, Amsterdam, The Netherlands
    Mol Microbiol 56:858-70. 2005
    ..Many of these new insights can be attributed to the use of recently developed biophysical techniques...
  5. doi request reprint Single-molecule micromanipulation studies of DNA and architectural proteins
    Remus Th Dame
    Department of Physics and Astronomy and Laser Centre, VU University Amsterdam, Amsterdam, The Netherlands
    Biochem Soc Trans 36:732-7. 2008
    ..Besides revealing architectural properties, these approaches can also reveal unique parameters not accessible to biochemical approaches, such as the binding kinetics and unbinding forces of individual proteins...
  6. ncbi request reprint The architectural role of nucleoid-associated proteins in the organization of bacterial chromatin: a molecular perspective
    Martijn S Luijsterburg
    Department of Physics and Astronomy, Faculty of Sciences, Vrije Universiteit, Amsterdam, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands
    J Struct Biol 156:262-72. 2006
    ..In this review, we provide an overview of the major nucleoid-associated proteins from a structural perspective and we discuss their possible roles in dynamically shaping the bacterial nucleoid...
  7. ncbi request reprint The major architects of chromatin: architectural proteins in bacteria, archaea and eukaryotes
    Martijn S Luijsterburg
    Swammerdam Institute for Life Sciences, University of Amsterdam, Kruislaan, Amsterdam, The Netherlands
    Crit Rev Biochem Mol Biol 43:393-418. 2008
    ..We conclude that the underlying mechanisms that shape and remodel genomes are remarkably similar among bacteria, archaea and eukaryotes...
  8. ncbi request reprint Bacterial chromatin organization by H-NS protein unravelled using dual DNA manipulation
    Remus T Dame
    Department of Physics and Astronomy and Laser Centre, Vrije Universiteit, De Boelelaan 1081, 1081 HV, Amsterdam, The Netherlands
    Nature 444:387-90. 2006
    ..Finally, our experimental approach is widely applicable to other DNA bridging proteins, as well as to complex DNA interactions involving multiple DNA molecules...
  9. pmc Predicting the effect of ions on the conformation of the H-NS dimerization domain
    Jocelyne Vreede
    Computational Chemistry, van t Hoff Institute for Molecular Sciences, University of Amsterdam, Amsterdam, The Netherlands
    Biophys J 103:89-98. 2012
    ..Together, our simulations suggest that osmoregulation could be mediated by changes in the ratio of parallel- and antiparallel-oriented H-NS dimers...