Jaap S Sinninghe Damsté

Summary

Affiliation: Royal Netherlands Institute for Sea Research
Country: The Netherlands

Publications

  1. pmc Temperature-induced increase in methane release from peat bogs: a mesocosm experiment
    Julia F van Winden
    Department of Geosciences, Utrecht University, Utrecht, The Netherlands
    PLoS ONE 7:e39614. 2012
  2. pmc A comparative genomics study of genetic products potentially encoding ladderane lipid biosynthesis
    Jayne E Rattray
    Department of Microbiology, IWWR, Radboud University Nijmegen, Toernooiveld 1, 6525 ED Nijmegen, The Netherlands
    Biol Direct 4:8. 2009
  3. ncbi request reprint Structural identification of the diester preen-gland waxes of the red knot (Calidris canutus)
    J S Sinninghe Damste
    Department of Marine Biogeochemistry and Toxicology, Netherlands Institute for Sea Research, P O Box 59, 1790 AB Den Burg, The Netherlands
    J Nat Prod 63:381-4. 2000
  4. pmc Structural characterization of diabolic acid-based tetraester, tetraether and mixed ether/ester, membrane-spanning lipids of bacteria from the order Thermotogales
    Jaap S Sinninghe Damsté
    Department of Marine Biogeochemistry and Toxicology, Royal Netherlands Institute for Sea Research NIOZ, PO Box 59, 1790 AB, Den Burg, Texel, The Netherlands
    Arch Microbiol 188:629-41. 2007
  5. ncbi request reprint Fossil DNA in cretaceous black shales: myth or reality?
    Jaap S Sinninghe Damsté
    Department of Marine Biogeochemistry and Toxicology, Royal Netherlands Institute for Sea Research, Den Burg, The Netherlands
    Astrobiology 6:299-302. 2006
  6. ncbi request reprint Structural identification of ladderane and other membrane lipids of planctomycetes capable of anaerobic ammonium oxidation (anammox)
    Jaap S Sinninghe Damsté
    Royal Netherlands Institute for Sea Research NIOZ, Department of Marine Biogeochemistry and Toxicology, Texel, The Netherlands
    FEBS J 272:4270-83. 2005
  7. ncbi request reprint The rise of the rhizosolenid diatoms
    Jaap S Sinninghe Damsté
    Department of Marine Biogeochemistry and Toxicology, Royal Netherlands Institute for Sea Research, Post Office Box 59, 1790 AB Den Burg, Texel, Netherlands
    Science 304:584-7. 2004
  8. pmc Distribution of membrane lipids of planktonic Crenarchaeota in the Arabian Sea
    Jaap S Sinninghe Damsté
    Department of Marine Biogeochemistry and Toxicology, Royal Netherlands Institute for Sea Research, Den Burg, Texel, The Netherlands
    Appl Environ Microbiol 68:2997-3002. 2002
  9. ncbi request reprint Linearly concatenated cyclobutane lipids form a dense bacterial membrane
    Jaap S Sinninghe Damsté
    Royal Netherlands Institute for Sea Research NIOZ, Department of Marine Biogeochemistry and Toxicology, PO Box 59, 1790 AB Den Burg, The Netherlands
    Nature 419:708-12. 2002
  10. ncbi request reprint Novel polyunsaturated n-alkenes in the marine diatom Rhizosolenia setigera
    J S Damste
    Netherlands Institute for Sea Research NIOZ, Department of Marine Biogeochemistry and Toxicology, Department of Marine Biology, University of Groningen, The Netherlands
    Eur J Biochem 267:5727-32. 2000

Collaborators

Detail Information

Publications33

  1. pmc Temperature-induced increase in methane release from peat bogs: a mesocosm experiment
    Julia F van Winden
    Department of Geosciences, Utrecht University, Utrecht, The Netherlands
    PLoS ONE 7:e39614. 2012
    ..Whereas 98% of the produced methane is retained at 5°C, this drops to approximately 50% at 25°C. This implies that warming at the mid to high latitudes may be enhanced through increased methane release from peat bogs...
  2. pmc A comparative genomics study of genetic products potentially encoding ladderane lipid biosynthesis
    Jayne E Rattray
    Department of Microbiology, IWWR, Radboud University Nijmegen, Toernooiveld 1, 6525 ED Nijmegen, The Netherlands
    Biol Direct 4:8. 2009
    ..These moieties are under high ring strain and are synthesised by a presently unknown biosynthetic pathway...
  3. ncbi request reprint Structural identification of the diester preen-gland waxes of the red knot (Calidris canutus)
    J S Sinninghe Damste
    Department of Marine Biogeochemistry and Toxicology, Netherlands Institute for Sea Research, P O Box 59, 1790 AB Den Burg, The Netherlands
    J Nat Prod 63:381-4. 2000
    ....
  4. pmc Structural characterization of diabolic acid-based tetraester, tetraether and mixed ether/ester, membrane-spanning lipids of bacteria from the order Thermotogales
    Jaap S Sinninghe Damsté
    Department of Marine Biogeochemistry and Toxicology, Royal Netherlands Institute for Sea Research NIOZ, PO Box 59, 1790 AB, Den Burg, Texel, The Netherlands
    Arch Microbiol 188:629-41. 2007
    ....
  5. ncbi request reprint Fossil DNA in cretaceous black shales: myth or reality?
    Jaap S Sinninghe Damsté
    Department of Marine Biogeochemistry and Toxicology, Royal Netherlands Institute for Sea Research, Den Burg, The Netherlands
    Astrobiology 6:299-302. 2006
  6. ncbi request reprint Structural identification of ladderane and other membrane lipids of planctomycetes capable of anaerobic ammonium oxidation (anammox)
    Jaap S Sinninghe Damsté
    Royal Netherlands Institute for Sea Research NIOZ, Department of Marine Biogeochemistry and Toxicology, Texel, The Netherlands
    FEBS J 272:4270-83. 2005
    ..This was consistent with their proposed biochemical function, namely as predominant membrane lipids of the so-called anammoxosome, the specific organelle where anammox catabolism takes place in the cell...
  7. ncbi request reprint The rise of the rhizosolenid diatoms
    Jaap S Sinninghe Damsté
    Department of Marine Biogeochemistry and Toxicology, Royal Netherlands Institute for Sea Research, Post Office Box 59, 1790 AB Den Burg, Texel, Netherlands
    Science 304:584-7. 2004
    ..The rapid rise of the rhizosolenid diatoms probably resulted from a major reorganization of the nutrient budget in the mid-Cretaceous oceans, triggered by plate tectonics...
  8. pmc Distribution of membrane lipids of planktonic Crenarchaeota in the Arabian Sea
    Jaap S Sinninghe Damsté
    Department of Marine Biogeochemistry and Toxicology, Royal Netherlands Institute for Sea Research, Den Burg, Texel, The Netherlands
    Appl Environ Microbiol 68:2997-3002. 2002
    ..B. Karner, E. F. DeLong, and D. M. Karl ( Nature 409:507-510, 2001) that the world's oceans contain ca. 10(28) cells of planktonic Crenarchaeota...
  9. ncbi request reprint Linearly concatenated cyclobutane lipids form a dense bacterial membrane
    Jaap S Sinninghe Damsté
    Royal Netherlands Institute for Sea Research NIOZ, Department of Marine Biogeochemistry and Toxicology, PO Box 59, 1790 AB Den Burg, The Netherlands
    Nature 419:708-12. 2002
    ..Our results further illustrate that microbial membrane lipid structures are far more diverse than previously recognized...
  10. ncbi request reprint Novel polyunsaturated n-alkenes in the marine diatom Rhizosolenia setigera
    J S Damste
    Netherlands Institute for Sea Research NIOZ, Department of Marine Biogeochemistry and Toxicology, Department of Marine Biology, University of Groningen, The Netherlands
    Eur J Biochem 267:5727-32. 2000
    ..Structural and stable carbon isotopic evidence suggests that these polyenes are biosynthesized by chain elongation of the C22:6n-3 fatty acid, followed by decarboxylation and introduction of double bonds at specific positions...
  11. ncbi request reprint Crenarchaeol: the characteristic core glycerol dibiphytanyl glycerol tetraether membrane lipid of cosmopolitan pelagic crenarchaeota
    Jaap S Sinninghe Damsté
    Royal Netherlands Institute for Sea Research NIOZ, Department of Marine Biogeochemistry and Toxicology, PO Box 59, 1790 AB Den Burg, The Netherlands
    J Lipid Res 43:1641-51. 2002
    ..This prevents the dense packing characteristic for the cyclopentane ring-containing GDGTs membrane lipids used by hyperthermophilic crenarchaeota to adjust their membrane fluidity to high temperatures...
  12. pmc Fossilized glycolipids reveal past oceanic N2 fixation by heterocystous cyanobacteria
    Thorsten Bauersachs
    Department of Marine Organic Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, P O Box 59, 1790 AB Den Burg Texel, The Netherlands
    Proc Natl Acad Sci U S A 107:19190-4. 2010
    ..Our study thus suggests that heterocystous cyanobacteria played a major role in adding "new" fixed nitrogen to surface waters in past stratified oceans...
  13. ncbi request reprint Water table related variations in the abundance of intact archaeal membrane lipids in a Swedish peat bog
    Johan W H Weijers
    Department of Marine Biogeochemistry and Toxicology, Royal Netherlands Institute for Sea Research, P O Box 59, 1790 AB Den Burg, Texel, The Netherlands
    FEMS Microbiol Lett 239:51-6. 2004
    ....
  14. ncbi request reprint Structural identification of the beta-hydroxy fatty acid-based diester preen gland waxes of shorebirds
    W Irene C Rijpstra
    Departments of Marine Biogeochemistry and Toxicology and Marine Ecology and Evolution, Royal Netherlands Institute for Sea Research NIOZ, PO Box 59, 1790 AB Den Burg, The Netherlands
    J Nat Prod 70:1804-7. 2007
    ....
  15. ncbi request reprint Improved analysis of ladderane lipids in biomass and sediments using high-performance liquid chromatography/atmospheric pressure chemical ionization tandem mass spectrometry
    Ellen C Hopmans
    Royal Netherlands Institute for Sea Research, P O Box 59, 1790 AB Den Burg, Texel, The Netherlands
    Rapid Commun Mass Spectrom 20:2099-103. 2006
    ..5 ng/g for the ladderane fatty acids and of 0.7 ng/g for the monoether. It is foreseen that this method will allow the investigation of the occurrence of anaerobic ammonium oxidation in natural settings in much greater detail than before...
  16. doi request reprint Crenarchaeol dominates the membrane lipids of Candidatus Nitrososphaera gargensis, a thermophilic group I.1b Archaeon
    Angela Pitcher
    Department of Marine Organic Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, Den Burg, The Netherlands
    ISME J 4:542-52. 2010
    ..Moreover, this work supports the hypothesis that crenarchaeol is specific to all AOA and highlights specific lipids, which may prove useful as biomarkers for 'Ca. N. gargensis'-like AOA...
  17. ncbi request reprint Diversity and distribution of a key sulpholipid biosynthetic gene in marine microbial assemblages
    Laura Villanueva
    Department of Marine Organic Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, PO Box 59, Den Burg, 179AB, The Netherlands
    Environ Microbiol 16:774-87. 2014
    ..Lipid analysis revealed that specific SQDGs were characteristic of microbial mat depth, suggesting that SQDG lipids are associated with specific producers. ..
  18. pmc Cultivation and genomic, nutritional, and lipid biomarker characterization of Roseiflexus strains closely related to predominant in situ populations inhabiting Yellowstone hot spring microbial mats
    Marcel T J van der Meer
    NIOZ Royal Netherlands Institute for Sea Research, Department of Marine Organic Biogeochemistry, P O Box 59, 1790 AB Den Burg, Texel, Netherlands
    J Bacteriol 192:3033-42. 2010
    ..The isolates exhibit temperature, pH, and sulfide preferences typical of their habitat. Lipids produced by these isolates matched much better with mat lipids than do lipids produced by R. castenholzii or Chloroflexus isolates...
  19. doi request reprint Linking isoprenoidal GDGT membrane lipid distributions with gene abundances of ammonia-oxidizing Thaumarchaeota and uncultured crenarchaeotal groups in the water column of a tropical lake (Lake Challa, East Africa)
    Laura K Buckles
    Department of Earth Sciences, Faculty of Geosciences, Utrecht University, PO Box 80 021, 3508 TA, Utrecht, The Netherlands
    Environ Microbiol 15:2445-62. 2013
    ..e. tex86 )...
  20. ncbi request reprint Alkane-1,2-diol-based glycosides and fatty glycosides and wax esters in Roseiflexus castenholzii and hot spring microbial mats
    Marcel T J van ver Meer
    Netherlands Institute for Sea Research NIOZ, Department of Marine Biogeochemistry and Toxicology, P O Box 59, 1790 AB Den Burg, Texel, The Netherlands
    Arch Microbiol 178:229-37. 2002
    ..In lipid extracts from two nonsulfidic hot spring microbial mats, similar alkane-1,2-diol-based lipids were detected in minor amounts. R. castenholzii lipids are compared to lipids of mats and other thermophilic mat isolates...
  21. pmc Tetraether membrane lipids of Candidatus "Aciduliprofundum boonei", a cultivated obligate thermoacidophilic euryarchaeote from deep-sea hydrothermal vents
    Stefan Schouten
    Department of Marine Biogeochemistry and Toxicology, Royal Netherlands Institute for Sea Research, PO Box 59, 1790 AB Den Burg, Texel, The Netherlands
    Extremophiles 12:119-24. 2008
    ..The latter core lipids have been rarely reported previously. Intact polar lipid analysis revealed that they predominantly consist of GDGTs with a phospho-glycerol headgroup...
  22. ncbi request reprint Sources for sedimentary bacteriohopanepolyols as revealed by 16S rDNA stratigraphy
    Marco J L Coolen
    Department of Marine Organic Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, PO Box 59, 1790 AB Den Burg Texel, The Netherlands
    Environ Microbiol 10:1783-803. 2008
    ..This combined application of advanced geochemical and paleogenomical tools further refined our knowledge about Holocene biogeochemical processes in Ace Lake...
  23. pmc Core and intact polar glycerol dibiphytanyl glycerol tetraether lipids of ammonia-oxidizing archaea enriched from marine and estuarine sediments
    Angela Pitcher
    NIOZ Royal Netherlands Institute for Sea Research, Department of Marine Organic Biogeochemistry, P O Box 59, 1790 AB Den Burg, Texel, Netherlands
    Appl Environ Microbiol 77:3468-77. 2011
    ..1a AOA: they were synthesized by all three sedimentary AOA and "Candidatus Nitrosopumilus maritimus"; however, they were absent in the group I.1b AOA "Candidatus Nitrososphaera gargensis."..
  24. ncbi request reprint A re-evaluation of the archaeal membrane lipid biosynthetic pathway
    Laura Villanueva
    Department of Marine Organic Biogeochemistry, Royal Netherlands Institute for Sea Research NIOZ, PO Box 59, NL 1790 AB Den Burg, The Netherlands
    Nat Rev Microbiol 12:438-48. 2014
    ..We propose an alternative archaeal lipid biosynthetic pathway that is based on a 'multiple-key, multiple-lock' mechanism. ..
  25. pmc Intact polar and core glycerol dibiphytanyl glycerol tetraether lipids of group I.1a and I.1b thaumarchaeota in soil
    Jaap S Sinninghe Damsté
    NIOZ Royal Netherlands Institute for Sea Research, Department of Marine Organic Biogeochemistry, Den Burg, Netherlands
    Appl Environ Microbiol 78:6866-74. 2012
    ..This study, in combination with previous studies, also suggests that hydroxylated GDGTs occur in the I.1a, but not in the I.1b, subgroup of the thaumarchaeota...
  26. ncbi request reprint Characterization of a deep-sea microbial mat from an active cold seep at the Milano mud volcano in the Eastern Mediterranean Sea
    Sander K Heijs
    Department of Microbiology, Center for Ecological and Evolutionary Studies, University of Groningen, Haren, The Netherlands
    FEMS Microbiol Ecol 54:47-56. 2005
    ....
  27. pmc 13,16-Dimethyl octacosanedioic acid (iso-diabolic acid), a common membrane-spanning lipid of Acidobacteria subdivisions 1 and 3
    Jaap S Sinninghe Damsté
    NIOZ Royal Netherlands Institute for Sea Research, Department of Marine Organic Biogeochemistry, P O Box 59, 1790 AB Den Burg, Netherlands
    Appl Environ Microbiol 77:4147-54. 2011
    ..Since the GDGT distribution in soils is much more complex, branched GDGTs in soil likely also originate from other (acido)bacteria capable of biosynthesizing these components...
  28. ncbi request reprint Expression of annual cycles in preen wax composition in red knots: constraints on the changing phenotype
    Jeroen Reneerkens
    Royal Netherlands Institute for Sea Research NIOZ, 1790 AB Den Burg, Texel, The Netherlands
    J Exp Zool A Ecol Genet Physiol 307:127-39. 2007
    ..Diester preen wax secretion was synchronized with the peak in body mass in spring, but became less well expressed under constant photoperiodic conditions and when food availability was limited...
  29. ncbi request reprint Analytical methodology for TEX86 paleothermometry by high-performance liquid chromatography/atmospheric pressure chemical ionization-mass spectrometry
    Stefan Schouten
    Department of Marine Biogeochemistry and Toxicology, Royal Netherlands Institute for Sea Research, P O Box 59, 1790 AB, Den Burg, Texel, The Netherlands
    Anal Chem 79:2940-4. 2007
    ..Our results suggest that TEX86 analysis by HPLC/APCI-MS is robust and can be determined with analytical errors comparable to those of other temperature proxies...
  30. ncbi request reprint Impact of carbon metabolism on 13C signatures of cyanobacteria and green non-sulfur-like bacteria inhabiting a microbial mat from an alkaline siliceous hot spring in Yellowstone National Park (USA)
    Marcel T J van der Meer
    Royal Netherlands Institute for Sea Research NIOZ, Department of Marine Biogeochemistry and Toxicology, PO Box 59, 1790 AB Den Burg, Texel, The Netherlands
    Environ Microbiol 9:482-91. 2007
    ..The assimilation of 13C-enriched cyanobacterial carbon may thus lead to enriched 13C-contents of GNSLB cell components...
  31. ncbi request reprint Switch to diester preen waxes may reduce avian nest predation by mammalian predators using olfactory cues
    Jeroen Reneerkens
    Royal Netherlands Institute for Sea Research NIOZ, 1790 AB Den Burg, Texel, The Netherlands
    J Exp Biol 208:4199-202. 2005
    ..This is consistent with the hypothesis that diester preen waxes reduce birds' smell and thereby reduce predation risk...
  32. doi request reprint Genetic biomarkers of the sterol-biosynthetic pathway in microalgae
    Laura Villanueva
    Department of Marine Organic Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, PO Box 59, 179AB, Den Burg, The Netherlands
    Environ Microbiol Rep 6:35-44. 2014
    ....
  33. doi request reprint Rapid analysis of long-chain glycolipids in heterocystous cyanobacteria using high-performance liquid chromatography coupled to electrospray ionization tandem mass spectrometry
    Thorsten Bauersachs
    NIOZ Royal Netherlands Institute for Sea Research, Department of Marine Organic Biogeochemistry, P O Box 59, 1790 AB Den Burg, The Netherlands
    Rapid Commun Mass Spectrom 23:1387-94. 2009
    ....