Research Topics
| Jaap S Sinninghe DamstéSummaryAffiliation: Royal Netherlands Institute for Sea Research Country: The Netherlands Publications
| Collaborators
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Detail Information
Publications
A comparative genomics study of genetic products potentially encoding ladderane lipid biosynthesisJayne E Rattray
Department of Microbiology, IWWR, Radboud University Nijmegen, Toernooiveld 1, 6525 ED Nijmegen, The Netherlands
Biol Direct 4:8. 2009..These moieties are under high ring strain and are synthesised by a presently unknown biosynthetic pathway...
Structural identification of the diester preen-gland waxes of the red knot (Calidris canutus)J S Sinninghe Damste
Department of Marine Biogeochemistry and Toxicology, Netherlands Institute for Sea Research, P O Box 59, 1790 AB Den Burg, The Netherlands
J Nat Prod 63:381-4. 2000....
Structural identification of ladderane and other membrane lipids of planctomycetes capable of anaerobic ammonium oxidation (anammox)Jaap S Sinninghe Damsté
Royal Netherlands Institute for Sea Research NIOZ, Department of Marine Biogeochemistry and Toxicology, Texel, The Netherlands
FEBS J 272:4270-83. 2005..This was consistent with their proposed biochemical function, namely as predominant membrane lipids of the so-called anammoxosome, the specific organelle where anammox catabolism takes place in the cell...
The rise of the rhizosolenid diatomsJaap S Sinninghe Damsté
Department of Marine Biogeochemistry and Toxicology, Royal Netherlands Institute for Sea Research, Post Office Box 59, 1790 AB Den Burg, Texel, Netherlands
Science 304:584-7. 2004..The rapid rise of the rhizosolenid diatoms probably resulted from a major reorganization of the nutrient budget in the mid-Cretaceous oceans, triggered by plate tectonics...
Linearly concatenated cyclobutane lipids form a dense bacterial membraneJaap S Sinninghe Damsté
Royal Netherlands Institute for Sea Research NIOZ, Department of Marine Biogeochemistry and Toxicology, PO Box 59, 1790 AB Den Burg, The Netherlands
Nature 419:708-12. 2002..Our results further illustrate that microbial membrane lipid structures are far more diverse than previously recognized...
Crenarchaeol: the characteristic core glycerol dibiphytanyl glycerol tetraether membrane lipid of cosmopolitan pelagic crenarchaeotaJaap S Sinninghe Damsté
Royal Netherlands Institute for Sea Research NIOZ, Department of Marine Biogeochemistry and Toxicology, PO Box 59, 1790 AB Den Burg, The Netherlands
J Lipid Res 43:1641-51. 2002..This prevents the dense packing characteristic for the cyclopentane ring-containing GDGTs membrane lipids used by hyperthermophilic crenarchaeota to adjust their membrane fluidity to high temperatures...
Structural characterization of diabolic acid-based tetraester, tetraether and mixed ether/ester, membrane-spanning lipids of bacteria from the order ThermotogalesJaap S Sinninghe Damsté
Department of Marine Biogeochemistry and Toxicology, Royal Netherlands Institute for Sea Research NIOZ, PO Box 59, 1790 AB, Den Burg, Texel, The Netherlands
Arch Microbiol 188:629-41. 2007....
Distribution of membrane lipids of planktonic Crenarchaeota in the Arabian SeaJaap S Sinninghe Damsté
Department of Marine Biogeochemistry and Toxicology, Royal Netherlands Institute for Sea Research, Den Burg, Texel, The Netherlands
Appl Environ Microbiol 68:2997-3002. 2002..B. Karner, E. F. DeLong, and D. M. Karl ( Nature 409:507-510, 2001) that the world's oceans contain ca. 10(28) cells of planktonic Crenarchaeota...
Novel polyunsaturated n-alkenes in the marine diatom Rhizosolenia setigeraJ S Damste
Netherlands Institute for Sea Research NIOZ, Department of Marine Biogeochemistry and Toxicology, Department of Marine Biology, University of Groningen, The Netherlands
Eur J Biochem 267:5727-32. 2000..Structural and stable carbon isotopic evidence suggests that these polyenes are biosynthesized by chain elongation of the C22:6n-3 fatty acid, followed by decarboxylation and introduction of double bonds at specific positions...
Fossil DNA in cretaceous black shales: myth or reality?Jaap S Sinninghe Damsté
Department of Marine Biogeochemistry and Toxicology, Royal Netherlands Institute for Sea Research, Den Burg, The Netherlands
Astrobiology 6:299-302. 2006
Improved analysis of ladderane lipids in biomass and sediments using high-performance liquid chromatography/atmospheric pressure chemical ionization tandem mass spectrometryEllen C Hopmans
Royal Netherlands Institute for Sea Research, P O Box 59, 1790 AB Den Burg, Texel, The Netherlands
Rapid Commun Mass Spectrom 20:2099-103. 2006..5 ng/g for the ladderane fatty acids and of 0.7 ng/g for the monoether. It is foreseen that this method will allow the investigation of the occurrence of anaerobic ammonium oxidation in natural settings in much greater detail than before...
Structural identification of the beta-hydroxy fatty acid-based diester preen gland waxes of shorebirdsW Irene C Rijpstra
Departments of Marine Biogeochemistry and Toxicology and Marine Ecology and Evolution, Royal Netherlands Institute for Sea Research NIOZ, PO Box 59, 1790 AB Den Burg, The Netherlands
J Nat Prod 70:1804-7. 2007....
Fossilized glycolipids reveal past oceanic N2 fixation by heterocystous cyanobacteriaThorsten Bauersachs
Department of Marine Organic Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, P O Box 59, 1790 AB Den Burg Texel, The Netherlands
Proc Natl Acad Sci U S A 107:19190-4. 2010..Our study thus suggests that heterocystous cyanobacteria played a major role in adding "new" fixed nitrogen to surface waters in past stratified oceans...
Cultivation and genomic, nutritional, and lipid biomarker characterization of Roseiflexus strains closely related to predominant in situ populations inhabiting Yellowstone hot spring microbial matsMarcel T J van der Meer
NIOZ Royal Netherlands Institute for Sea Research, Department of Marine Organic Biogeochemistry, P O Box 59, 1790 AB Den Burg, Texel, Netherlands
J Bacteriol 192:3033-42. 2010..The isolates exhibit temperature, pH, and sulfide preferences typical of their habitat. Lipids produced by these isolates matched much better with mat lipids than do lipids produced by R. castenholzii or Chloroflexus isolates...
Crenarchaeol dominates the membrane lipids of Candidatus Nitrososphaera gargensis, a thermophilic group I.1b ArchaeonAngela Pitcher
Department of Marine Organic Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, Den Burg, The Netherlands
ISME J 4:542-52. 2010..Moreover, this work supports the hypothesis that crenarchaeol is specific to all AOA and highlights specific lipids, which may prove useful as biomarkers for 'Ca. N. gargensis'-like AOA...
Core and intact polar glycerol dibiphytanyl glycerol tetraether lipids of ammonia-oxidizing archaea enriched from marine and estuarine sedimentsAngela Pitcher
NIOZ Royal Netherlands Institute for Sea Research, Department of Marine Organic Biogeochemistry, P O Box 59, 1790 AB Den Burg, Texel, Netherlands
Appl Environ Microbiol 77:3468-77. 2011..1a AOA: they were synthesized by all three sedimentary AOA and "Candidatus Nitrosopumilus maritimus"; however, they were absent in the group I.1b AOA "Candidatus Nitrososphaera gargensis."..
Sources for sedimentary bacteriohopanepolyols as revealed by 16S rDNA stratigraphyMarco J L Coolen
Department of Marine Organic Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, PO Box 59, 1790 AB Den Burg Texel, The Netherlands
Environ Microbiol 10:1783-803. 2008..This combined application of advanced geochemical and paleogenomical tools further refined our knowledge about Holocene biogeochemical processes in Ace Lake...
Alkane-1,2-diol-based glycosides and fatty glycosides and wax esters in Roseiflexus castenholzii and hot spring microbial matsMarcel T J van ver Meer
Netherlands Institute for Sea Research NIOZ, Department of Marine Biogeochemistry and Toxicology, P O Box 59, 1790 AB Den Burg, Texel, The Netherlands
Arch Microbiol 178:229-37. 2002..In lipid extracts from two nonsulfidic hot spring microbial mats, similar alkane-1,2-diol-based lipids were detected in minor amounts. R. castenholzii lipids are compared to lipids of mats and other thermophilic mat isolates...
Tetraether membrane lipids of Candidatus "Aciduliprofundum boonei", a cultivated obligate thermoacidophilic euryarchaeote from deep-sea hydrothermal ventsStefan Schouten
Department of Marine Biogeochemistry and Toxicology, Royal Netherlands Institute for Sea Research, PO Box 59, 1790 AB Den Burg, Texel, The Netherlands
Extremophiles 12:119-24. 2008..The latter core lipids have been rarely reported previously. Intact polar lipid analysis revealed that they predominantly consist of GDGTs with a phospho-glycerol headgroup...
Intact polar and core glycerol dibiphytanyl glycerol tetraether lipids of group I.1a and I.1b thaumarchaeota in soilJaap S Sinninghe Damsté
NIOZ Royal Netherlands Institute for Sea Research, Department of Marine Organic Biogeochemistry, Den Burg, Netherlands
Appl Environ Microbiol 78:6866-74. 2012..This study, in combination with previous studies, also suggests that hydroxylated GDGTs occur in the I.1a, but not in the I.1b, subgroup of the thaumarchaeota...
Expression of annual cycles in preen wax composition in red knots: constraints on the changing phenotypeJeroen Reneerkens
Royal Netherlands Institute for Sea Research NIOZ, 1790 AB Den Burg, Texel, The Netherlands
J Exp Zool A Ecol Genet Physiol 307:127-39. 2007..Diester preen wax secretion was synchronized with the peak in body mass in spring, but became less well expressed under constant photoperiodic conditions and when food availability was limited...
Impact of carbon metabolism on 13C signatures of cyanobacteria and green non-sulfur-like bacteria inhabiting a microbial mat from an alkaline siliceous hot spring in Yellowstone National Park (USA)Marcel T J van der Meer
Royal Netherlands Institute for Sea Research NIOZ, Department of Marine Biogeochemistry and Toxicology, PO Box 59, 1790 AB Den Burg, Texel, The Netherlands
Environ Microbiol 9:482-91. 2007..The assimilation of 13C-enriched cyanobacterial carbon may thus lead to enriched 13C-contents of GNSLB cell components...
Characterization of a deep-sea microbial mat from an active cold seep at the Milano mud volcano in the Eastern Mediterranean SeaSander K Heijs
Department of Microbiology, Center for Ecological and Evolutionary Studies, University of Groningen, Haren, The Netherlands
FEMS Microbiol Ecol 54:47-56. 2005....
13,16-Dimethyl octacosanedioic acid (iso-diabolic acid), a common membrane-spanning lipid of Acidobacteria subdivisions 1 and 3Jaap S Sinninghe Damsté
NIOZ Royal Netherlands Institute for Sea Research, Department of Marine Organic Biogeochemistry, P O Box 59, 1790 AB Den Burg, Netherlands
Appl Environ Microbiol 77:4147-54. 2011..Since the GDGT distribution in soils is much more complex, branched GDGTs in soil likely also originate from other (acido)bacteria capable of biosynthesizing these components...
Analytical methodology for TEX86 paleothermometry by high-performance liquid chromatography/atmospheric pressure chemical ionization-mass spectrometryStefan Schouten
Department of Marine Biogeochemistry and Toxicology, Royal Netherlands Institute for Sea Research, P O Box 59, 1790 AB, Den Burg, Texel, The Netherlands
Anal Chem 79:2940-4. 2007..Our results suggest that TEX86 analysis by HPLC/APCI-MS is robust and can be determined with analytical errors comparable to those of other temperature proxies...
Switch to diester preen waxes may reduce avian nest predation by mammalian predators using olfactory cuesJeroen Reneerkens
Royal Netherlands Institute for Sea Research NIOZ, 1790 AB Den Burg, Texel, The Netherlands
J Exp Biol 208:4199-202. 2005..This is consistent with the hypothesis that diester preen waxes reduce birds' smell and thereby reduce predation risk...
Water table related variations in the abundance of intact archaeal membrane lipids in a Swedish peat bogJohan W H Weijers
Department of Marine Biogeochemistry and Toxicology, Royal Netherlands Institute for Sea Research, P.O. Box 59, 1790 AB Den Burg, Texel, The Netherlands
FEMS Microbiol Lett 239:51-6. 2004....
Rapid analysis of long-chain glycolipids in heterocystous cyanobacteria using high-performance liquid chromatography coupled to electrospray ionization tandem mass spectrometryThorsten Bauersachs
NIOZ Royal Netherlands Institute for Sea Research, Department of Marine Organic Biogeochemistry, P O Box 59, 1790 AB Den Burg, The Netherlands
Rapid Commun Mass Spectrom 23:1387-94. 2009....
