Research Topics
Genomes and Genes | Annemieke Aartsma-RusSummaryAffiliation: Leiden University Medical Center Country: The Netherlands Publications
| Collaborators
|
Detail Information
Publications
Antisense-mediated modulation of splicing: therapeutic implications for Duchenne muscular dystrophyAnnemieke Aartsma-Rus
Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands
RNA Biol 7:453-61. 2010....
Innovating therapies for muscle diseasesAnnemieke Aartsma-Rus
Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands Electronic address
Handb Clin Neurol 113:1497-501. 2013..Although none of the proposed strategies has yet proven to be of therapeutic value in patients, it is reasonable to expect that clinical efficacy will soon be demonstrated for some of the more advanced approaches...
Overview on AON designAnnemieke Aartsma-Rus
Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands
Methods Mol Biol 867:117-29. 2012..This allows retrospective analysis of effective and ineffective AONs to obtain guidelines to optimize future AON design...
Overview on DMD exon skippingAnnemieke Aartsma-Rus
Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands
Methods Mol Biol 867:97-116. 2012..Finally, an overview of clinical trials is given and outstanding questions and hurdles are discussed...
Progress in therapeutic antisense applications for neuromuscular disordersAnnemieke Aartsma-Rus
Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands
Eur J Hum Genet 18:146-53. 2010....
Exonic sequences provide better targets for antisense oligonucleotides than splice site sequences in the modulation of Duchenne muscular dystrophy splicingAnnemieke Aartsma-Rus
Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands
Oligonucleotides 20:69-77. 2010..This suggests that exons may be better AON targets than introns per se, because of their higher GC content, which generally will result in improved AON binding...
New insights in gene-derived therapy: the example of Duchenne muscular dystrophyAnnemieke Aartsma-Rus
Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands
Ann N Y Acad Sci 1214:199-212. 2010..This review will explain the rationale and current state of affairs of these approaches and will then discuss how these gene-derived therapies might also be applicable to other diseases...
Guidelines for antisense oligonucleotide design and insight into splice-modulating mechanismsAnnemieke Aartsma-Rus
Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands
Mol Ther 17:548-53. 2009..On the basis of only four parameters, we could correctly classify 79% of all AONs as effective or ineffective, suggesting these parameters can be used to more optimally design splice-modulating AONs...
Therapeutic exon skipping for dysferlinopathies?Annemieke Aartsma-Rus
Center for Human and Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands
Eur J Hum Genet 18:889-94. 2010..We also show that DYSF exon skipping seems to be as straightforward as DMD exon skipping, as AONs to induce efficient skipping of four DYSF exons were readily identified...
Antisense-mediated exon skipping: a versatile tool with therapeutic and research applicationsAnnemieke Aartsma-Rus
DMD Genetic Therapy Group, Department of Human Genetics, Leiden University Medical Center, P O Box 9600, 2300 RC, Leiden, The Netherlands
RNA 13:1609-24. 2007..This knowledge allows us to optimize therapeutic exon skipping, but also opens up a range of other applications for the exon skipping approach...
Antisense-induced exon skipping for duplications in Duchenne muscular dystrophyAnnemieke Aartsma-Rus
Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands
BMC Med Genet 8:43. 2007..These mutations are in principle ideal targets for this approach since the specific skipping of duplicated exons would generate original, full-length transcripts...
Entries in the Leiden Duchenne muscular dystrophy mutation database: an overview of mutation types and paradoxical cases that confirm the reading-frame ruleAnnemieke Aartsma-Rus
Leiden University Medical Center, Department of Human Genetics, P O Box 9600, 2300 RC Leiden, The Netherlands
Muscle Nerve 34:135-44. 2006..In this study we provide an update of the mutational variability in the DMD gene, particularly focusing on genotype-phenotype correlations and mutations that appear to be exceptions to the reading-frame rule...
Dual exon skipping in myostatin and dystrophin for Duchenne muscular dystrophyDwi U Kemaladewi
Center for Human and Clinical Genetics, Leiden University Medical Center, Postzone S4 P, PO Box 9600, Leiden, 2300RC, The Netherlands
BMC Med Genomics 4:36. 2011..In this study, we aim to knockdown myostatin by means of exon skipping, a technique which has been successfully applied to reframe the genetic defect of dystrophin gene in DMD patients...
Exploring the frontiers of therapeutic exon skipping for Duchenne muscular dystrophy by double targeting within one or multiple exonsAnnemieke Aartsma-Rus
DMD Genetic Therapy Group, Center for Human and Clinical Genetics, Leiden University Medical Center, RC Leiden, The Netherlands
Mol Ther 14:401-7. 2006..We aimed at inducing larger multiexon-skipping stretches, such as exons 17-51, exons 42-55, and exons 45-59. However, this appeared complicated and may be dependent on cotranscriptional splicing and the size of the flanking introns...
Assessment of the feasibility of exon 45-55 multiexon skipping for Duchenne muscular dystrophyLaura Van Vliet
DMD Genetic Therapy Group, Department of Human Genetics, Leiden University, Medical Center, Postzone S4 P, PO Box 9600, 2300RC, Leiden, The Netherlands
BMC Med Genet 9:105. 2008..The levels of intended multiexon skips are typically low and highly variable, and may be dependent on the order of intron removal. We hypothesized that the splicing order might favor the induction of multiexon 45-55 skipping...
Antisense-induced multiexon skipping for Duchenne muscular dystrophy makes more senseAnnemieke Aartsma-Rus
Center for Human and Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands
Am J Hum Genet 74:83-92. 2004..In fact, we here demonstrate its feasibility in myotubes from a patient with an exon 48-50 deletion. The application of multiexon skipping may provide a more uniform methodology for a larger group of patients with DMD...
Targeted exon skipping in transgenic hDMD mice: A model for direct preclinical screening of human-specific antisense oligonucleotidesMattie Bremmer-Bout
Center for Human and Clinical Genetics, Leiden University Medical Center, Wassenaarseweg 72, 2333 AL Leiden, The Netherlands
Mol Ther 10:232-40. 2004..These data highlight the high sequence specificity of this therapy and present the hDMD mouse as a unique model to optimize human-specific exon skipping in vivo...
Targeted exon skipping as a potential gene correction therapy for Duchenne muscular dystrophyAnnemieke Aartsma-Rus
Department of Human Genetics, Leiden University Medical Center, Wassenaarseweg 72, 2333 AL Leiden, The Netherlands
Neuromuscul Disord 12:S71-7. 2002..Accordingly, these antisense oligoribonucleotides would allow correction of over 50% of deletions and 22% of duplications reported in the Leiden DMD-mutation Database...
Local dystrophin restoration with antisense oligonucleotide PRO051Judith C van Deutekom
Department of Human and Clinical Genetics, Leiden University Medical Center, The Netherlands
N Engl J Med 357:2677-86. 2007..We explored the safety, adverse-event profile, and local dystrophin-restoring effect of a single, intramuscular dose of an antisense oligonucleotide, PRO051, in patients with this disease...
Accurate quantification of dystrophin mRNA and exon skipping levels in duchenne muscular dystrophyPietro Spitali
Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands
Lab Invest 90:1396-402. 2010..The use of the same technique allows comparison between different groups working on exon skipping in the mdx mouse model...
Functional analysis of 114 exon-internal AONs for targeted DMD exon skipping: indication for steric hindrance of SR protein binding sitesAnnemieke Aartsma-Rus
Leiden University Medical Center, Center for Human and Clinical Genetics, 2333 AL Leiden, The Netherlands
Oligonucleotides 15:284-97. 2005..Our results suggest that effective exon-internal AONs primarily act by blocking SR binding sites (which often correspond to open structures) and that ESEfinder may be used to refine AON design for DMD and other genes...
In vivo comparison of 2'-O-methyl phosphorothioate and morpholino antisense oligonucleotides for Duchenne muscular dystrophy exon skippingHans A Heemskerk
DMD Genetic Therapy Group, Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands
J Gene Med 11:257-66. 2009..In vivo studies are mainly performed using 2'-O-methyl phosphorothioate (2OMePS) or morpholino (PMO) AONs. These compounds were never directly compared...
Comparison of skeletal muscle pathology and motor function of dystrophin and utrophin deficient mouse strainsMaaike van Putten
Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands
Neuromuscul Disord 22:406-17. 2012..This makes mdx/utrn +/- mice valuable for testing the benefit of potential therapies on muscle function parameters...
Cell-type specific regulation of myostatin signalingDwi U Kemaladewi
Center for Human and Clinical Genetics, Leiden University Medical Center, Postzone S4 P, PO Box 9600, 2300RC, Leiden, The Netherlands
FASEB J 26:1462-72. 2012..Together, our results identify a molecular mechanism that explains the cell-type specific aspects of signaling by myostatin and other TGF-β family members...
Gene expression profiling to monitor therapeutic and adverse effects of antisense therapies for Duchenne muscular dystrophyPeter A C 't Hoen
Leiden University Medical Center, Center for Human and Clinical Genetics, Room S 04 003, Postbus 9600, 2300 RC Leiden, The Netherlands
Pharmacogenomics 7:281-97. 2006....
A 3 months mild functional test regime does not affect disease parameters in young mdx miceMaaike van Putten
Department of Human Genetics, Leiden University Medical Center, 2300 RC Leiden, The Netherlands
Neuromuscul Disord 20:273-80. 2010..We conclude that this test regime may be suitable for short-term functional evaluation of therapeutic approaches in the mdx mouse...
Preclinical PK and PD studies on 2'-O-methyl-phosphorothioate RNA antisense oligonucleotides in the mdx mouse modelHans Heemskerk
Center for Human and Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands
Mol Ther 18:1210-7. 2010..c. administration, we selected this patient-convenient delivery method for future clinical study protocols...
Development of antisense-mediated exon skipping as a treatment for duchenne muscular dystrophyHans Heemskerk
Duchenne Muscular Dystrophy Genetic Therapy Group, Department of Human Genetics, Leiden University, Medical Center, Leiden, The Netherlands
Ann N Y Acad Sci 1175:71-9. 2009..We propose that different chemistries should be further developed in parallel in order to hasten the transfer of the exon skipping therapy to the clinic...
Theoretic applicability of antisense-mediated exon skipping for Duchenne muscular dystrophy mutationsAnnemieke Aartsma-Rus
Center for Human and Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands
Hum Mutat 30:293-9. 2009..Further research is needed to determine the functionality of different in-frame dystrophins and a number of hurdles has to be overcome before this approach can be applied clinically...
Therapeutic antisense-induced exon skipping in cultured muscle cells from six different DMD patientsAnnemieke Aartsma-Rus
Center for Human and Clinical Genetics, Leiden University Medical Center, Wassenaarseweg 72, 2333 AL Leiden, The Netherlands
Hum Mol Genet 12:907-14. 2003..These results document important progress towards a clinically applicable, small-molecule based therapy...
The therapeutic potential of antisense-mediated exon skippingGert Jan van Ommen
Leiden University Medical Center, Department of Human Genetics, Zone S4 P, PO Box 9600, 2300 RC Leiden, The Netherlands
Curr Opin Mol Ther 10:140-9. 2008..Antisense-mediated reading frame restoration is the most promising therapy for Duchenne muscular dystrophy. Data from a first clinical trial are encouraging and additional trials are ongoing or are expected to be initiated soon...
Antisense-mediated exon skipping to correct IL-12Rbeta1 deficiency in T cellsEsther van de Vosse
Department of Infectious Diseases, Leiden University Medical Center, Leiden, The Netherlands
Blood 113:4548-55. 2009..We demonstrated that T cells can be highly efficiently transduced with AONs and are amenable to antisense-mediated exon skipping. Furthermore, we showed that exon skipping (partly) corrects the IL-12Rbeta1 deficiency in patients' cells...
Long-term Exon Skipping Studies With 2'-O-Methyl Phosphorothioate Antisense Oligonucleotides in Dystrophic Mouse ModelsChrista L Tanganyika-de Winter
Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands
Mol Ther Nucleic Acids 1:e44. 2012..Our results also indicate that long-term subcutaneous treatment in dystrophic mouse models with these AONs is safe and beneficial.Molecular Therapy-Nucleic Acids (2012) 1, e44; doi:10.1038/mtna.2012.38; published online 4 September 2012...
The effects of low levels of dystrophin on mouse muscle function and pathologyMaaike van Putten
Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands
PLoS ONE 7:e31937. 2012..Based on these findings, we conclude that while even dystrophin levels below 15% can improve pathology and performance, levels of >20% are needed to fully protect muscle fibers from exercise-induced damage...
Splice modulating therapies for human diseasePietro Spitali
Department of Human Genetics, Leiden University Medical Center, 2300 RC Leiden, The Netherlands
Cell 148:1085-8. 2012..Effective approaches include restoring open reading frames, influencing alternative splicing, and inducing exon inclusion to generate beneficial proteins and remove deleterious ones...
Assessment of cardiac function in three mouse dystrophinopathies by magnetic resonance imagingIngrid E C Verhaart
Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands
Neuromuscul Disord 22:418-26. 2012..Therefore magnetic resonance imaging is an adequate technique to determine heart function in dystrophinopathy mouse models and can be used to assess the effect of potential therapies...
Overview on applications of antisense-mediated exon skippingWilleke M C van Roon-Mom
Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands
Methods Mol Biol 867:79-96. 2012..For each application, examples are discussed and the current state of the art is described...
Targeting several CAG expansion diseases by a single antisense oligonucleotideMelvin M Evers
Center for Human and Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands
PLoS ONE 6:e24308. 2011....
Inhibition of IL-1 Signaling by Antisense Oligonucleotide-mediated Exon Skipping of IL-1 Receptor Accessory Protein (IL-1RAcP)A Seda Yilmaz-Elis
Center for Human and Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands
Mol Ther Nucleic Acids 2:e66. 2013..Molecular Therapy - Nucleic Acids (2013) 2, e66; doi:10.1038/mtna.2012.58; published online 22 January 2013...
Prednisolone treatment does not interfere with 2'-O-methyl phosphorothioate antisense-mediated exon skipping in Duchenne muscular dystrophyIngrid E C Verhaart
Department of Human Genetics, Leiden University Medical Center, 2300 RC Leiden, The Netherlands
Hum Gene Ther 23:262-73. 2012..Overall these results show that the use of prednisone forms no barrier to participation in clinical trials with AONs...
Phage display screening without repetitious selection roundsPeter A C 't Hoen
Center for Human and Clinical Genetics and Leiden Genome Technology Center, Leiden University Medical Center, 2300 RC Leiden, The Netherlands
Anal Biochem 421:622-31. 2012..We conclude that next generation sequencing can significantly empower phage display screenings by accelerating the finding of specific binders and restraining the number of false positive hits...
BMP antagonists enhance myogenic differentiation and ameliorate the dystrophic phenotype in a DMD mouse modelSongting Shi
Department of Molecular Cell Biology and Centre for Biomedical Genetics, Leiden, The Netherlands
Neurobiol Dis 41:353-60. 2011..In conclusion, our results suggest that repression of BMP signaling may constitute an attractive adjunctive therapy for DMD patients...
Gene therapy for Duchenne muscular dystrophyIngrid E C Verhaart
Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands
Curr Opin Neurol 25:588-96. 2012..Years of research have come to fruition during the past 18 months with publications on clinical trials for several gene therapy approaches for Duchenne muscular dystrophy. This review covers the present status of these approaches...
Opportunities and challenges for the development of antisense treatment in neuromuscular disordersMaaike van Putten
Leiden University Medical Center, Department of Human Genetics, The Netherlands
Expert Opin Biol Ther 11:1025-37. 2011..EXPERT OPINION: A lot of progress has been made in the development of antisense-mediated approaches during recent years and they may become clinically applicable in the near future...
Advances in therapeutic RNA-targetingGert Jan B van Ommen
Department of Human Genetics, Leiden University Medical Center, P O Box 9600, 2300 RC Leiden, The Netherlands Electronic address
N Biotechnol 30:299-301. 2013..A final application, which is as yet under-explored but has major promise, is the functional in vivo study of protein isoforms by modulating their relative levels by AON-based skipping of alternative exons...
Antisense-mediated isoform switching of steroid receptor coactivator-1 in the central nucleus of the amygdala of the mouse brainIoannis Zalachoras
Division of Medical Pharmacology, Leiden Amsterdam Center for Drug Research, Leiden University Leiden University Medical Center, Leiden, The Netherlands
BMC Neurosci 14:5. 2013..This nuclear receptor coregulator exists in two splice variants (SRC-1a and SRC-1e) which display differential distribution and opposing activities in the brain, and whose mRNAs differ in a single SRC-1e specific exon...
