Marc Weeber

Summary

Affiliation: Erasmus MC
Country: The Netherlands

Publications

  1. ncbi request reprint Online tools to support literature-based discovery in the life sciences
    Marc Weeber
    Department of Medical Informatics, Erasmus MC University Medical Center Rotterdam, PO Box 1738, 3000 DR Rotterdam, The Netherlands
    Brief Bioinform 6:277-86. 2005
  2. ncbi request reprint Evaluation of techniques for increasing recall in a dictionary approach to gene and protein name identification
    Martijn J Schuemie
    Department of Medical Informatics, Erasmus University Medical Center Rotterdam, P O Box 1738, 3000 DR, Rotterdam, The Netherlands
    J Biomed Inform 40:316-24. 2007
  3. pmc Calling on a million minds for community annotation in WikiProteins
    Barend Mons
    Erasmus Medical Centre, Department of Medical Informatics, Rotterdam, The Netherlands
    Genome Biol 9:R89. 2008
  4. pmc Thesaurus-based disambiguation of gene symbols
    Bob J A Schijvenaars
    Department of Medical Informatics, Erasmus University Medical Center Rotterdam, P O Box 1738, 3000 DR Rotterdam, The Netherlands
    BMC Bioinformatics 6:149. 2005
  5. ncbi request reprint Automatic mining of the literature to generate new hypotheses for the possible link between periodontitis and atherosclerosis: lipopolysaccharide as a case study
    Kristina M Hettne
    Safety Assessment, AstraZeneca R and D Molndal, Sweden
    J Clin Periodontol 34:1016-24. 2007
  6. ncbi request reprint Contextual annotation of web pages for interactive browsing
    Erik van Mulligen
    Dept of Medical Informatics, Erasmus University Medical Center Rotterdam, PO Box 1738, 3000 DR Rotterdam, The Netherlands
    Stud Health Technol Inform 107:94-8. 2004
  7. pmc Training multidisciplinary biomedical informatics students: three years of experience
    Erik M van Mulligen
    Deartment of Medical Informatics, Erasmus University Medical Center Rotterdam, PO Box 1738, 3000 DR, Rotterdam, The Netherlands
    J Am Med Inform Assoc 15:246-54. 2008
  8. pmc Generating hypotheses by discovering implicit associations in the literature: a case report of a search for new potential therapeutic uses for thalidomide
    Marc Weeber
    Department of Social Pharmacy and Pharmacoepidemiology, Groningen University Institute for Drug Exploration, The Netherlands
    J Am Med Inform Assoc 10:252-9. 2003

Detail Information

Publications8

  1. ncbi request reprint Online tools to support literature-based discovery in the life sciences
    Marc Weeber
    Department of Medical Informatics, Erasmus MC University Medical Center Rotterdam, PO Box 1738, 3000 DR Rotterdam, The Netherlands
    Brief Bioinform 6:277-86. 2005
    ..This paper presents an overview of recent LBD research and discusses methodology, results and online tools that are available to the scientific community...
  2. ncbi request reprint Evaluation of techniques for increasing recall in a dictionary approach to gene and protein name identification
    Martijn J Schuemie
    Department of Medical Informatics, Erasmus University Medical Center Rotterdam, P O Box 1738, 3000 DR, Rotterdam, The Netherlands
    J Biomed Inform 40:316-24. 2007
    ..Application of 23 spelling variation rules to the combined dictionaries further increased recall. However, many rules appeared to have no effect and some appear to have a detrimental effect on precision...
  3. pmc Calling on a million minds for community annotation in WikiProteins
    Barend Mons
    Erasmus Medical Centre, Department of Medical Informatics, Rotterdam, The Netherlands
    Genome Biol 9:R89. 2008
    ..We call on a 'million minds' to annotate a 'million concepts' and to collect facts from the literature with the reward of collaborative knowledge discovery. The system is available for beta testing at http://www.wikiprofessional.org...
  4. pmc Thesaurus-based disambiguation of gene symbols
    Bob J A Schijvenaars
    Department of Medical Informatics, Erasmus University Medical Center Rotterdam, P O Box 1738, 3000 DR Rotterdam, The Netherlands
    BMC Bioinformatics 6:149. 2005
    ..Massive text mining of the biological literature holds great promise of relating disparate information and discovering new knowledge. However, disambiguation of gene symbols is a major bottleneck...
  5. ncbi request reprint Automatic mining of the literature to generate new hypotheses for the possible link between periodontitis and atherosclerosis: lipopolysaccharide as a case study
    Kristina M Hettne
    Safety Assessment, AstraZeneca R and D Molndal, Sweden
    J Clin Periodontol 34:1016-24. 2007
    ..The aim of the current report was to generate and explore new hypotheses into how, in a pathophysiological sense, atherosclerosis and periodontitis could be linked...
  6. ncbi request reprint Contextual annotation of web pages for interactive browsing
    Erik van Mulligen
    Dept of Medical Informatics, Erasmus University Medical Center Rotterdam, PO Box 1738, 3000 DR Rotterdam, The Netherlands
    Stud Health Technol Inform 107:94-8. 2004
    ..The new approach merges the searching and browsing into one combined "read-and-search" mode and alleviates the shift users are normally forced to between searching and reading...
  7. pmc Training multidisciplinary biomedical informatics students: three years of experience
    Erik M van Mulligen
    Deartment of Medical Informatics, Erasmus University Medical Center Rotterdam, PO Box 1738, 3000 DR, Rotterdam, The Netherlands
    J Am Med Inform Assoc 15:246-54. 2008
    ....
  8. pmc Generating hypotheses by discovering implicit associations in the literature: a case report of a search for new potential therapeutic uses for thalidomide
    Marc Weeber
    Department of Social Pharmacy and Pharmacoepidemiology, Groningen University Institute for Drug Exploration, The Netherlands
    J Am Med Inform Assoc 10:252-9. 2003
    ..However, experimental and clinical evaluation is needed to validate these hypotheses and to assess the trade-off between therapeutic benefits and toxicities...