Tobias Marschall

Summary

Affiliation: Center for Mathematics and Computer Science
Country: The Netherlands

Publications

  1. pmc Discovering motifs that induce sequencing errors
    Manuel Allhoff
    Life Sciences Group, Centrum Wiskunde and Informatica, Amsterdam, Netherlands
    BMC Bioinformatics 14:S1. 2013
  2. ncbi request reprint Probabilistic arithmetic automata and their applications
    Tobias Marschall
    Life Sciences Group, Centrum Wiskunde and Informatica CWI, Science Park 123, 1098 XG Amsterdam, TheNetherlands
    IEEE/ACM Trans Comput Biol Bioinform 9:1737-50. 2012
  3. pmc MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels
    Tobias Marschall
    Centrum Wiskunde and Informatica CWI, Life Sciences Group, Science Park 123, Amsterdam 1098 XG, The Netherlands and Department of Computer Science and Brown University, Providence, Rhode Island 02906, USA
    Bioinformatics 29:3143-50. 2013
  4. doi request reprint CLEVER: clique-enumerating variant finder
    Tobias Marschall
    Centrum Wiskunde and Informatica, Life Sciences Group, Amsterdam, The Netherlands
    Bioinformatics 28:2875-82. 2012

Collaborators

Detail Information

Publications4

  1. pmc Discovering motifs that induce sequencing errors
    Manuel Allhoff
    Life Sciences Group, Centrum Wiskunde and Informatica, Amsterdam, Netherlands
    BMC Bioinformatics 14:S1. 2013
    ..Extant approaches either incur decisive losses in power, due to relating errors with individual genomic positions rather than motifs, or do not properly distinguish between motif-induced and sequence-unspecific sources of errors...
  2. ncbi request reprint Probabilistic arithmetic automata and their applications
    Tobias Marschall
    Life Sciences Group, Centrum Wiskunde and Informatica CWI, Science Park 123, 1098 XG Amsterdam, TheNetherlands
    IEEE/ACM Trans Comput Biol Bioinform 9:1737-50. 2012
    ..Implementations are available as part of the MoSDi package. Its application programming interface facilitates the rapid development of new applications based on the PAA framework...
  3. pmc MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels
    Tobias Marschall
    Centrum Wiskunde and Informatica CWI, Life Sciences Group, Science Park 123, Amsterdam 1098 XG, The Netherlands and Department of Computer Science and Brown University, Providence, Rhode Island 02906, USA
    Bioinformatics 29:3143-50. 2013
    ..Also, discovering and genotyping longer indels has become particularly relevant owing to the increasing attention in globally concerted projects...
  4. doi request reprint CLEVER: clique-enumerating variant finder
    Tobias Marschall
    Centrum Wiskunde and Informatica, Life Sciences Group, Amsterdam, The Netherlands
    Bioinformatics 28:2875-82. 2012
    ..Despite the advances in sequencing speed, the computational discovery of structural variants is not yet standard. It is likely that many variants have remained undiscovered in most sequenced individuals...