Chi Hua Tung

Summary

Affiliation: National Chiao Tung University
Country: Taiwan

Publications

  1. pmc Kappa-alpha plot derived structural alphabet and BLOSUM-like substitution matrix for rapid search of protein structure database
    Chi Hua Tung
    Institute of Bioinformatics, National Chiao Tung University, Hsinchu, Taiwan
    Genome Biol 8:R31. 2007
  2. pmc Protein structure database search and evolutionary classification
    Jinn Moon Yang
    Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, 30050, Taiwan
    Nucleic Acids Res 34:3646-59. 2006
  3. pmc fastSCOP: a fast web server for recognizing protein structural domains and SCOP superfamilies
    Chi Hua Tung
    Institute of Bioinformatics, National Chiao Tung University, Hsinchu, 30050 Taiwan
    Nucleic Acids Res 35:W438-43. 2007

Collaborators

Detail Information

Publications3

  1. pmc Kappa-alpha plot derived structural alphabet and BLOSUM-like substitution matrix for rapid search of protein structure database
    Chi Hua Tung
    Institute of Bioinformatics, National Chiao Tung University, Hsinchu, Taiwan
    Genome Biol 8:R31. 2007
    ..3D-BLAST searches more than 12,000 protein structures in 1.2 s and yields good results in zones with low sequence similarity...
  2. pmc Protein structure database search and evolutionary classification
    Jinn Moon Yang
    Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, 30050, Taiwan
    Nucleic Acids Res 34:3646-59. 2006
    ..8 GHz) processors, our method searched more than 10 000 protein structures in 1.3 s and achieved a good agreement with search results from detailed structure alignment methods. [3D-BLAST is available at http://3d-blast.life.nctu.edu.tw]...
  3. pmc fastSCOP: a fast web server for recognizing protein structural domains and SCOP superfamilies
    Chi Hua Tung
    Institute of Bioinformatics, National Chiao Tung University, Hsinchu, 30050 Taiwan
    Nucleic Acids Res 35:W438-43. 2007
    ..These results suggest that the fastSCOP is robust and can be a useful server for recognizing the evolutionary classifications and the protein functions of novel structures. The server is accessible at http://fastSCOP.life.nctu.edu.tw...