Chi Hua Tung
Affiliation: National Chiao Tung University
- Kappa-alpha plot derived structural alphabet and BLOSUM-like substitution matrix for rapid search of protein structure databaseChi Hua Tung
Institute of Bioinformatics, National Chiao Tung University, Hsinchu, Taiwan
Genome Biol 8:R31. 2007..3D-BLAST searches more than 12,000 protein structures in 1.2 s and yields good results in zones with low sequence similarity...
- Protein structure database search and evolutionary classificationJinn Moon Yang
Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, 30050, Taiwan
Nucleic Acids Res 34:3646-59. 2006..8 GHz) processors, our method searched more than 10 000 protein structures in 1.3 s and achieved a good agreement with search results from detailed structure alignment methods. [3D-BLAST is available at http://3d-blast.life.nctu.edu.tw]...
- fastSCOP: a fast web server for recognizing protein structural domains and SCOP superfamiliesChi Hua Tung
Institute of Bioinformatics, National Chiao Tung University, Hsinchu, 30050 Taiwan
Nucleic Acids Res 35:W438-43. 2007..These results suggest that the fastSCOP is robust and can be a useful server for recognizing the evolutionary classifications and the protein functions of novel structures. The server is accessible at http://fastSCOP.life.nctu.edu.tw...