Ming Ta Hsu

Summary

Affiliation: National Yang-Ming University
Country: Taiwan

Publications

  1. pmc Transcription of muscle actin genes by a nuclear form of mitochondrial RNA polymerase
    Yu Ling Lee
    Institute of Biochemistry and Molecular Biology, School of Life Science, National Yang Ming University, Taipei, Taiwan
    PLoS ONE 6:e22583. 2011
  2. pmc Sequencing and comparative genome analysis of two pathogenic Streptococcus gallolyticus subspecies: genome plasticity, adaptation and virulence
    I Hsuan Lin
    Institute of Biomedical Informatics, National Yang Ming University, Taipei, Taiwan
    PLoS ONE 6:e20519. 2011
  3. pmc A novel regulatory event-based gene set analysis method for exploring global functional changes in heterogeneous genomic data sets
    Chien Yi Tung
    Institute of Microbiology and Immunology, National Yang Ming University, Taipei, Taiwan
    BMC Genomics 10:26. 2009
  4. pmc easyExon--a Java-based GUI tool for processing and visualization of Affymetrix exon array data
    Ting Yu Chang
    Institute of Microbiology and Immunology, National Yang Ming University, and Department of Education and Research, Taipei City Hospital, Taipei, Taiwan
    BMC Bioinformatics 9:432. 2008
  5. pmc Signature Evaluation Tool (SET): a Java-based tool to evaluate and visualize the sample discrimination abilities of gene expression signatures
    Chih Hung Jen
    Microarray and Gene Expression Analysis Core Facility, VGH National Yang Ming University Genome Research Center, Taipei, Taiwan
    BMC Bioinformatics 9:58. 2008
  6. pmc MicroRNA-122 plays a critical role in liver homeostasis and hepatocarcinogenesis
    Wei Chih Tsai
    Department of Biotechnology and Laboratory Science in Medicine, National Yang Ming University, Taipei, Taiwan
    J Clin Invest 122:2884-97. 2012
  7. pmc An H2A histone isotype regulates estrogen receptor target genes by mediating enhancer-promoter-3'-UTR interactions in breast cancer cells
    Chia Hsin Su
    Institute of Biochemistry and Molecular Biology, School of Life Science, National Yang Ming University, Taipei 11221, Taiwan, Republic of China, VYM Genome Research Center, National Yang Ming University, University System of Taiwan, Taipei 11221, Taiwan, Republic of China and Chien Tien Hsu Cancer Research Foundation, Taipei 11221, Taiwan, Republic of China
    Nucleic Acids Res 42:3073-88. 2014
  8. ncbi request reprint Chromosomal comparative genomic hybridization abnormalities in early- and late-onset human breast cancers: correlation with disease progression and TP53 mutations
    Yiin Jeng Jong
    Institute of Genetics, National Yang Ming University, 155 Li Non St, Sec 2, Taipei 112, Taiwan
    Cancer Genet Cytogenet 148:55-65. 2004
  9. ncbi request reprint ArrayFusion: a web application for multi-dimensional analysis of CGH, SNP and microarray data
    Tsun Po Yang
    Microarray and Gene Expression Analysis Core Facility, VGH National Yang Ming University Genome Research Center, Taipei, Taiwan
    Bioinformatics 22:2697-8. 2006
  10. doi request reprint Protein domain repetition is enriched in Streptococcal cell-surface proteins
    I Hsuan Lin
    Institute of Biomedical Informatics, National Yang Ming University, Taipei, Taiwan
    Genomics 100:370-9. 2012

Collaborators

Detail Information

Publications13

  1. pmc Transcription of muscle actin genes by a nuclear form of mitochondrial RNA polymerase
    Yu Ling Lee
    Institute of Biochemistry and Molecular Biology, School of Life Science, National Yang Ming University, Taipei, Taiwan
    PLoS ONE 6:e22583. 2011
    ..We also found that POLRMT gene is transcribed by spRNAP-IV, and actin genes are sensitive to oligomycin, suggesting a transcription coupling between mitochondria and nucleus...
  2. pmc Sequencing and comparative genome analysis of two pathogenic Streptococcus gallolyticus subspecies: genome plasticity, adaptation and virulence
    I Hsuan Lin
    Institute of Biomedical Informatics, National Yang Ming University, Taipei, Taiwan
    PLoS ONE 6:e20519. 2011
    ..gallolyticus biotypes and the type of disease an infected patient eventually develops...
  3. pmc A novel regulatory event-based gene set analysis method for exploring global functional changes in heterogeneous genomic data sets
    Chien Yi Tung
    Institute of Microbiology and Immunology, National Yang Ming University, Taipei, Taiwan
    BMC Genomics 10:26. 2009
    ..However, the detection power of conventional gene list or gene set-based approaches is limited on highly heterogeneous samples, such as tumors...
  4. pmc easyExon--a Java-based GUI tool for processing and visualization of Affymetrix exon array data
    Ting Yu Chang
    Institute of Microbiology and Immunology, National Yang Ming University, and Department of Education and Research, Taipei City Hospital, Taipei, Taiwan
    BMC Bioinformatics 9:432. 2008
    ..0 ST microarray (exon array), has appeared very recently. However, the application of this new technology is hindered by the lack of free and user-friendly software devoted to these novel platforms...
  5. pmc Signature Evaluation Tool (SET): a Java-based tool to evaluate and visualize the sample discrimination abilities of gene expression signatures
    Chih Hung Jen
    Microarray and Gene Expression Analysis Core Facility, VGH National Yang Ming University Genome Research Center, Taipei, Taiwan
    BMC Bioinformatics 9:58. 2008
    ..A tool to evaluate the discrimination power of candidate genes is therefore in high demand by clinical researchers...
  6. pmc MicroRNA-122 plays a critical role in liver homeostasis and hepatocarcinogenesis
    Wei Chih Tsai
    Department of Biotechnology and Laboratory Science in Medicine, National Yang Ming University, Taipei, Taiwan
    J Clin Invest 122:2884-97. 2012
    ....
  7. pmc An H2A histone isotype regulates estrogen receptor target genes by mediating enhancer-promoter-3'-UTR interactions in breast cancer cells
    Chia Hsin Su
    Institute of Biochemistry and Molecular Biology, School of Life Science, National Yang Ming University, Taipei 11221, Taiwan, Republic of China, VYM Genome Research Center, National Yang Ming University, University System of Taiwan, Taipei 11221, Taiwan, Republic of China and Chien Tien Hsu Cancer Research Foundation, Taipei 11221, Taiwan, Republic of China
    Nucleic Acids Res 42:3073-88. 2014
    ..These findings reveal a new role for histone isotypes in the regulation of gene expression in cancer cells, and suggest that these molecules may be targeted for anti-cancer drug discovery. ..
  8. ncbi request reprint Chromosomal comparative genomic hybridization abnormalities in early- and late-onset human breast cancers: correlation with disease progression and TP53 mutations
    Yiin Jeng Jong
    Institute of Genetics, National Yang Ming University, 155 Li Non St, Sec 2, Taipei 112, Taiwan
    Cancer Genet Cytogenet 148:55-65. 2004
    ....
  9. ncbi request reprint ArrayFusion: a web application for multi-dimensional analysis of CGH, SNP and microarray data
    Tsun Po Yang
    Microarray and Gene Expression Analysis Core Facility, VGH National Yang Ming University Genome Research Center, Taipei, Taiwan
    Bioinformatics 22:2697-8. 2006
    ..ArrayFusion therefore provides a new type of tool facilitating the integration of CGH and array results to provide new experimental directions...
  10. doi request reprint Protein domain repetition is enriched in Streptococcal cell-surface proteins
    I Hsuan Lin
    Institute of Biomedical Informatics, National Yang Ming University, Taipei, Taiwan
    Genomics 100:370-9. 2012
    ..Surface-associated tandem domain-containing proteins without experimental functional characterization may be potentially involved in the pathogenesis of streptococci and deserve further investigation...
  11. ncbi request reprint Chromosomal analysis of hepatic adenoma and focal nodular hyperplasia by comparative genomic hybridization
    Yann Jang Chen
    Center for General Education, National Yang Ming University, Taipei, Taiwan
    Genes Chromosomes Cancer 35:138-43. 2002
    ..Interestingly, CGH alteration hotspots found in HA, but not in FNH, appeared largely to coincide with common genomic lesions of cancerous HCC, suggesting an interesting relationship along the tumorigenesis pathway of HA and HCC...
  12. ncbi request reprint Blocking of G1/S transition and cell death in the regenerating liver of Hepatitis B virus X protein transgenic mice
    Bo Kuan Wu
    Faculty of Life Sciences and Institute of Genetics, National Yang Ming University, Taipei, Taiwan
    Biochem Biophys Res Commun 340:916-28. 2006
    ....
  13. pmc Pediatric primary central nervous system germ cell tumors of different prognosis groups show characteristic miRNome traits and chromosome copy number variations
    Hsei Wei Wang
    School of Life Sciences, Institute of Microbiology and Immunology, National Yang Ming University, Taipei, Taiwan
    BMC Genomics 11:132. 2010
    ..The second group of tumors requires more extensive drug and irradiation treatment regimens. The mechanisms underlying the differences in incidence and prognosis of the various GCT subgroups are unclear...