Jung Hsien Chiang

Summary

Affiliation: National Cheng Kung University
Country: Taiwan

Publications

  1. pmc Transcriptional activation of the Axl and PDGFR-α by c-Met through a ras- and Src-independent mechanism in human bladder cancer
    Chen Yun Yeh
    Department of Microbiology and Immunology, College of Medicine, National Cheng Kung University, Tainan, Taiwan
    BMC Cancer 11:139. 2011
  2. pmc Optimizing information in Next-Generation-Sequencing (NGS) reads for improving de novo genome assembly
    Tsunglin Liu
    Institute of Bioinformatics and Biosignal Transduction, National Cheng Kung University, Tainan, Taiwan
    PLoS ONE 8:e69503. 2013
  3. ncbi request reprint MeKE: discovering the functions of gene products from biomedical literature via sentence alignment
    Jung Hsien Chiang
    Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan 701, Taiwan, ROC
    Bioinformatics 19:1417-22. 2003
  4. doi request reprint Condensing biomedical journal texts through paragraph ranking
    Jung Hsien Chiang
    Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan, Taiwan
    Bioinformatics 27:1143-9. 2011
  5. pmc Automated evaluation of electronic discharge notes to assess quality of care for cardiovascular diseases using Medical Language Extraction and Encoding System (MedLEE)
    Jung Hsien Chiang
    Institute of Medical Informatics and Department of Computer Science, National Cheng Kung University, Tainan, Taiwan
    J Am Med Inform Assoc 17:245-52. 2010
  6. doi request reprint A combination of rough-based feature selection and RBF neural network for classification using gene expression data
    J H Chiang
    Department of Computer Science and Information Engineering, National Cheng Kung University, Taiwan, Republic of China
    IEEE Trans Nanobioscience 7:91-9. 2008
  7. pmc Modeling human cancer-related regulatory modules by GA-RNN hybrid algorithms
    Jung Hsien Chiang
    Department of Computer Science and Information Engineering, National Cheng Kung University, Tanian, Taiwan
    BMC Bioinformatics 8:91. 2007
  8. ncbi request reprint GIS: a biomedical text-mining system for gene information discovery
    Jung Hsien Chiang
    Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan 701, Taiwan, ROC
    Bioinformatics 20:120-1. 2004
  9. pmc GeneLibrarian: an effective gene-information summarization and visualization system
    Jung Hsien Chiang
    Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan, Taiwan
    BMC Bioinformatics 7:392. 2006
  10. ncbi request reprint Molecular mechanisms of system responses to novel stimuli are predictable from public data
    Samuel A Danziger
    Seattle Biomedical Research Institute, Seattle, WA 98109 5219 USA, Institute for Systems Biology, Seattle, WA 98109 5240 USA, The Key Laboratory of Developmental Genes and Human Disease, Ministry of Education, Institute of Life Science, Southeast University, Nanjing 210096, China and Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan 704, Taiwan
    Nucleic Acids Res 42:1442-60. 2014

Collaborators

Detail Information

Publications16

  1. pmc Transcriptional activation of the Axl and PDGFR-α by c-Met through a ras- and Src-independent mechanism in human bladder cancer
    Chen Yun Yeh
    Department of Microbiology and Immunology, College of Medicine, National Cheng Kung University, Tainan, Taiwan
    BMC Cancer 11:139. 2011
    ..A cross-talk between different receptor tyrosine kinases (RTKs) plays an important role in the pathogenesis of human cancers...
  2. pmc Optimizing information in Next-Generation-Sequencing (NGS) reads for improving de novo genome assembly
    Tsunglin Liu
    Institute of Bioinformatics and Biosignal Transduction, National Cheng Kung University, Tainan, Taiwan
    PLoS ONE 8:e69503. 2013
    ..But future error correction is needed for ARF-PE to also increase the assembly accuracy. ARF-PE is freely available at http://140.116.235.124/~tliu/arf-pe/. ..
  3. ncbi request reprint MeKE: discovering the functions of gene products from biomedical literature via sentence alignment
    Jung Hsien Chiang
    Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan 701, Taiwan, ROC
    Bioinformatics 19:1417-22. 2003
    ..Our aim was to develop an intelligent text-mining system that will extract from biomedical documents knowledge about the functions of gene products and thus facilitate computing with function...
  4. doi request reprint Condensing biomedical journal texts through paragraph ranking
    Jung Hsien Chiang
    Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan, Taiwan
    Bioinformatics 27:1143-9. 2011
    ..Full-text articles provide those details, but require more time to read. The primary goal of this study is to combine the advantages of concise abstracts and detail-rich full-texts to ease the burden of reading...
  5. pmc Automated evaluation of electronic discharge notes to assess quality of care for cardiovascular diseases using Medical Language Extraction and Encoding System (MedLEE)
    Jung Hsien Chiang
    Institute of Medical Informatics and Department of Computer Science, National Cheng Kung University, Tainan, Taiwan
    J Am Med Inform Assoc 17:245-52. 2010
    ..The result has validated a new tool to reliably extract QC measures for cardiovascular diseases...
  6. doi request reprint A combination of rough-based feature selection and RBF neural network for classification using gene expression data
    J H Chiang
    Department of Computer Science and Information Engineering, National Cheng Kung University, Taiwan, Republic of China
    IEEE Trans Nanobioscience 7:91-9. 2008
    ..We demonstrate the performance by several published datasets and the results show that our proposed method can achieve high classification accuracy rate...
  7. pmc Modeling human cancer-related regulatory modules by GA-RNN hybrid algorithms
    Jung Hsien Chiang
    Department of Computer Science and Information Engineering, National Cheng Kung University, Tanian, Taiwan
    BMC Bioinformatics 8:91. 2007
    ..However, the contemplating on controlling of feed-forward and feedback loops in transcriptional regulatory mechanisms is not resolved adequately in Saccharomyces cerevisiae, nor is in human cancer cells...
  8. ncbi request reprint GIS: a biomedical text-mining system for gene information discovery
    Jung Hsien Chiang
    Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan 701, Taiwan, ROC
    Bioinformatics 20:120-1. 2004
    ..The aim of this system is to provide researchers an easy-to-use bio-information service that will rapidly survey the rapidly burgeoning biomedical literature...
  9. pmc GeneLibrarian: an effective gene-information summarization and visualization system
    Jung Hsien Chiang
    Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan, Taiwan
    BMC Bioinformatics 7:392. 2006
    ..To efficiently obtain and digest such information, there is a pressing need for automated information-summarization and functional-similarity clustering of genes...
  10. ncbi request reprint Molecular mechanisms of system responses to novel stimuli are predictable from public data
    Samuel A Danziger
    Seattle Biomedical Research Institute, Seattle, WA 98109 5219 USA, Institute for Systems Biology, Seattle, WA 98109 5240 USA, The Key Laboratory of Developmental Genes and Human Disease, Ministry of Education, Institute of Life Science, Southeast University, Nanjing 210096, China and Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan 704, Taiwan
    Nucleic Acids Res 42:1442-60. 2014
    ....
  11. doi request reprint AutoBind: automatic extraction of protein-ligand-binding affinity data from biological literature
    Darby Tien Hao Chang
    Department of Electrical Engineering, Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan 70101, Taiwan
    Bioinformatics 28:2162-8. 2012
    ..However, such approaches are time-consuming and most of these databases are updated only a few times per year. Hence, there is an immediate demand for an automatic extraction method with high precision for binding affinity collection...
  12. pmc PhosphoChain: a novel algorithm to predict kinase and phosphatase networks from high-throughput expression data
    Wei Ming Chen
    Institute for Systems Biology, Seattle, WA 98109 5234, USA, Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan, Taiwan and Seattle Biomedical Research Institute, Seattle, WA 98109 5219, USA
    Bioinformatics 29:2435-44. 2013
    ..However, predictions of protein phosphorylation and signaling networks remain a significant challenge, lagging behind predictions of transcriptional regulatory networks into which they often feed...
  13. pmc An integrative approach to identifying cancer chemoresistance-associated pathways
    Shih Yi Chao
    Department of Computer Science and Information Engineering, Ching Yun University, Jhongli City, Taoyuan County, Taiwan
    BMC Med Genomics 4:23. 2011
    ..This study elucidates the chemoresistance-associated pathways retrieved from the integrated biological interaction networks and identifies signature genes relevant for chemotherapy resistance...
  14. ncbi request reprint NCS: incorporating positioning data to quantify nucleosome stability in yeast
    Jung Hsien Chiang
    Department of Computer Science and Information Engineering, National Cheng Kung University, Tainan 70101, Taiwan
    Bioinformatics 30:761-7. 2014
    ..Based on mass sequencing data, we proposed a nucleosome center score (NCS) for quantifying nucleosome stability by measuring shifts of the nucleosome center, and then mapping NCS scores to nucleosome positions in Brogaard et al.'s study...
  15. ncbi request reprint Pruning and model-selecting algorithms in the RBF frameworks constructed by support vector learning
    Pei Yi Hao
    Department of Information Management, National Kaohsiung University of Applied Sciences, Kaohsiung 807, Taiwan, ROC
    Int J Neural Syst 16:283-93. 2006
    ..We illustrate this approach with synthetic data simulation and face detection problem in order to demonstrate the pruning effectiveness...
  16. doi request reprint Novel algorithm for coexpression detection in time-varying microarray data sets
    Zong Xian Yin
    Department of Multimedia and Entertainment Science, Southern Taiwan University, Taiwan
    IEEE/ACM Trans Comput Biol Bioinform 5:120-35. 2008
    ..Three real-world microarray datasets are employed to evaluate the performance of the proposed algorithm...