Ming Che Shih

Summary

Affiliation: Academia Sinica
Country: Taiwan

Publications

  1. pmc Identification and characterization of the microRNA transcriptome of a moth orchid Phalaenopsis aphrodite
    Ya Ting Chao
    Agricultural Biotechnology Research Center, Academia Sinica, Taipei, 11529, Taiwan
    Plant Mol Biol 84:529-48. 2014
  2. pmc BeMADS1 is a key to delivery MADSs into nucleus in reproductive tissues-De novo characterization of Bambusa edulis transcriptome and study of MADS genes in bamboo floral development
    Ming Che Shih
    Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan
    BMC Plant Biol 14:179. 2014
  3. pmc Orchidstra: an integrated orchid functional genomics database
    Chun lin Su
    Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan
    Plant Cell Physiol 54:e11. 2013
  4. pmc Insights into hypoxic systemic responses based on analyses of transcriptional regulation in Arabidopsis
    Fu chiun Hsu
    Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan
    PLoS ONE 6:e28888. 2011
  5. pmc A modified ABCDE model of flowering in orchids based on gene expression profiling studies of the moth orchid Phalaenopsis aphrodite
    Chun lin Su
    Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan
    PLoS ONE 8:e80462. 2013
  6. pmc PGASO: A synthetic biology tool for engineering a cellulolytic yeast
    Jui Jen Chang
    Biodiversity Research Center, Academia Sinica, Taipei, 115, Taiwan
    Biotechnol Biofuels 5:53. 2012
  7. pmc A highly efficient β-glucosidase from the buffalo rumen fungus Neocallimastix patriciarum W5
    Hsin Liang Chen
    Biodiversity Research Center, Academia Sinica, Taipei, 115, Taiwan
    Biotechnol Biofuels 5:24. 2012
  8. pmc Submergence confers immunity mediated by the WRKY22 transcription factor in Arabidopsis
    Fu chiun Hsu
    Agricultural Biotechnology Research Center, Academia Sinica, Taipei 115, Taiwan
    Plant Cell 25:2699-713. 2013
  9. doi request reprint De novo assembly of expressed transcripts and global analysis of the Phalaenopsis aphrodite transcriptome
    Chun lin Su
    Agricultural Biotechnology Research Center, Academia Sinica, Taipei, 11529, Taiwan
    Plant Cell Physiol 52:1501-14. 2011
  10. pmc Systematic screening of glycosylation- and trafficking-associated gene knockouts in Saccharomyces cerevisiae identifies mutants with improved heterologous exocellulase activity and host secretion
    Tzi Yuan Wang
    Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan
    BMC Biotechnol 13:71. 2013

Collaborators

  • Wen Hsiung Li
  • Ya Ting Chao
  • Choun Sea Lin
  • Yao Ting Huang
  • Ming Tsair Chan
  • Jeremy JW Chen
  • Chen Tran Hsu
  • Jui Jen Chang
  • Chun lin Su
  • Tzi Yuan Wang
  • Hsin Liang Chen
  • Huei Mien Ke
  • Fu chiun Hsu
  • Chieh Chen Huang
  • Feng Ju Ho
  • Chun Yi Chen
  • Yao Chien Alex Chang
  • Wan Chieh Chen
  • Sz Kai Ruan
  • Hsing Yi Cho
  • Kuo Yen Hung
  • Cheng Yu Ho
  • Hsiao Ping Peng
  • Ann Ying Lee
  • Shu Jen Chou
  • Yueh Chin Wu
  • Huang Mo Sung
  • Mei Yi Chou
  • Yo Chia Chen
  • Hsien Lin Liu
  • Caroline Thia
  • Hao Yeh Lin
  • Jiunn Tzong Wu
  • Ya Ru Li
  • Ya Wun Cai
  • Shao Hua Yen
  • Po Chun Ho
  • Chih Jen Huang
  • I Li Wang
  • Yu Han Hou
  • Christine H T Wang
  • Hiaow Ting Christine Wang
  • Wan Ting Lin
  • Tao Yuan Wang
  • Tsung Yu Tsai
  • Mei Yeh Jade Lu
  • Chih Kuan Chen
  • Yu Hsiang Chen
  • Chun Chieh A Shih
  • Shao Pei Chou
  • Ya Wen Tsai
  • Te Chin Chu
  • Kee Tuan Hwa
  • Teh Yang Hwa
  • Mei Yeh J Lu
  • Chi Tang Mao
  • Jeng Yi Li

Detail Information

Publications14

  1. pmc Identification and characterization of the microRNA transcriptome of a moth orchid Phalaenopsis aphrodite
    Ya Ting Chao
    Agricultural Biotechnology Research Center, Academia Sinica, Taipei, 11529, Taiwan
    Plant Mol Biol 84:529-48. 2014
    ..The results provide valuable information about the composition, expression and function of miRNA in P. aphrodite, and will aid functional genomics studies of orchids. ..
  2. pmc BeMADS1 is a key to delivery MADSs into nucleus in reproductive tissues-De novo characterization of Bambusa edulis transcriptome and study of MADS genes in bamboo floral development
    Ming Che Shih
    Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan
    BMC Plant Biol 14:179. 2014
    ..In plants, many MADS genes control flower development, and the ABCDE model has been developed to explain how the genes function together to create the different whorls within a flower...
  3. pmc Orchidstra: an integrated orchid functional genomics database
    Chun lin Su
    Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan
    Plant Cell Physiol 54:e11. 2013
    ..In the future, the content of the Orchidstra database will be expanded with transcriptome data and genomic information from more orchid species...
  4. pmc Insights into hypoxic systemic responses based on analyses of transcriptional regulation in Arabidopsis
    Fu chiun Hsu
    Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan
    PLoS ONE 6:e28888. 2011
    ..These results suggested that regulation of ABA biosynthesis could be required for systemic responses. The implications of these results for the systemic responses of root-flooded Arabidopsis are discussed...
  5. pmc A modified ABCDE model of flowering in orchids based on gene expression profiling studies of the moth orchid Phalaenopsis aphrodite
    Chun lin Su
    Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan
    PLoS ONE 8:e80462. 2013
    ....
  6. pmc PGASO: A synthetic biology tool for engineering a cellulolytic yeast
    Jui Jen Chang
    Biodiversity Research Center, Academia Sinica, Taipei, 115, Taiwan
    Biotechnol Biofuels 5:53. 2012
    ..abstract:..
  7. pmc A highly efficient β-glucosidase from the buffalo rumen fungus Neocallimastix patriciarum W5
    Hsin Liang Chen
    Biodiversity Research Center, Academia Sinica, Taipei, 115, Taiwan
    Biotechnol Biofuels 5:24. 2012
    ..abstract:..
  8. pmc Submergence confers immunity mediated by the WRKY22 transcription factor in Arabidopsis
    Fu chiun Hsu
    Agricultural Biotechnology Research Center, Academia Sinica, Taipei 115, Taiwan
    Plant Cell 25:2699-713. 2013
    ..In conclusion, we propose that submergence triggers innate immunity in Arabidopsis via WRKY22, a response that may protect against a higher probability of pathogen infection either during or after flooding. ..
  9. doi request reprint De novo assembly of expressed transcripts and global analysis of the Phalaenopsis aphrodite transcriptome
    Chun lin Su
    Agricultural Biotechnology Research Center, Academia Sinica, Taipei, 11529, Taiwan
    Plant Cell Physiol 52:1501-14. 2011
    ..We concluded that, with proper assembly to combine outputs of next-generation sequencing platforms, transcriptome information can be enriched in gene discovery, functional annotation and expression profiling of a non-model organism...
  10. pmc Systematic screening of glycosylation- and trafficking-associated gene knockouts in Saccharomyces cerevisiae identifies mutants with improved heterologous exocellulase activity and host secretion
    Tzi Yuan Wang
    Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan
    BMC Biotechnol 13:71. 2013
    ..cerevisiae often suffers from hyper-glycosylation and/or poor secretion. Thus, there is a need to genetically engineer the yeast to reduce its glycosylation strength and to increase its secretion ability...
  11. doi request reprint Integrating an algal β-carotene hydroxylase gene into a designed carotenoid-biosynthesis pathway increases carotenoid production in yeast
    Jui Jen Chang
    Department of Medical Research, China Medical University Hospital, No 91 Hsueh Shih Road, Taichung 402, Taiwan Biodiversity Research Center, Academia Sinica, 128 Academia Road, Sec 2, Nankang, Taipei 115, Taiwan
    Bioresour Technol 184:2-8. 2015
    ..These results suggest that β-carotene hydroxylase plays a crucial role in the biosynthesis of carotenoids. ..
  12. pmc Assembling a cellulase cocktail and a cellodextrin transporter into a yeast host for CBP ethanol production
    Jui Jen Chang
    Biodiversity Research Center, Academia Sinica, 115, Taipei, Taiwan
    Biotechnol Biofuels 6:19. 2013
    ..For this purpose, a synthetic biology technique that can transform multiple genes into a genome is instrumental. Moreover, a strategy to select cellulases that interact synergistically is needed...
  13. pmc Functional characterization of cellulases identified from the cow rumen fungus Neocallimastix patriciarum W5 by transcriptomic and secretomic analyses
    Tzi Yuan Wang
    Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan
    Biotechnol Biofuels 4:24. 2011
    ..abstract:..
  14. doi request reprint Catalog of Erycina pusilla miRNA and categorization of reproductive phase-related miRNAs and their target gene families
    Choun Sea Lin
    Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan
    Plant Mol Biol 82:193-204. 2013
    ..Experiments using 5'RLM-RACE demonstrated that the genes EpSPL1, 2, 3, 4, 7, 9, 10, 14 and EpAP2-9, -10, -11 were regulated by epu-miR156 and epu-miR172, respectively...