Arthur Chun Chieh Shih

Summary

Affiliation: Academia Sinica
Country: Taiwan

Publications

  1. pmc Functional characterization of cellulases identified from the cow rumen fungus Neocallimastix patriciarum W5 by transcriptomic and secretomic analyses
    Tzi Yuan Wang
    Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan
    Biotechnol Biofuels 4:24. 2011
  2. pmc SinicView: a visualization environment for comparisons of multiple nucleotide sequence alignment tools
    Arthur Chun Chieh Shih
    Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan
    BMC Bioinformatics 7:103. 2006
  3. pmc Phylo-mLogo: an interactive and hierarchical multiple-logo visualization tool for alignment of many sequences
    Arthur Chun Chieh Shih
    Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan
    BMC Bioinformatics 8:63. 2007
  4. pmc Anatomical and transcriptional dynamics of maize embryonic leaves during seed germination
    Wen yu Liu
    Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan
    Proc Natl Acad Sci U S A 110:3979-84. 2013
  5. pmc Assembler for de novo assembly of large genomes
    Te Chin Chu
    Institute of Information Science, Academia Sinica, Taipei 115, Taiwan
    Proc Natl Acad Sci U S A 110:E3417-24. 2013
  6. ncbi request reprint GS-Aligner: a novel tool for aligning genomic sequences using bit-level operations
    Arthur Chun Chieh Shih
    Institute of Information Science, Academia Sinica, Taipei, Taiwan
    Mol Biol Evol 20:1299-309. 2003
  7. ncbi request reprint Transfer of chloroplast genomic DNA to mitochondrial genome occurred at least 300 MYA
    Daryi Wang
    Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan
    Mol Biol Evol 24:2040-8. 2007
  8. pmc Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing
    Li Ching Hsieh
    Genomics Research Center, Academia Sinica, Taipei 115, Taiwan
    Plant Physiol 151:2120-32. 2009
  9. pmc Simultaneous amino acid substitutions at antigenic sites drive influenza A hemagglutinin evolution
    Arthur Chun Chieh Shih
    Institute of Information Science, Academia Sinica, Nankang, Taipei 115, Taiwan
    Proc Natl Acad Sci U S A 104:6283-8. 2007
  10. doi request reprint GR-Aligner: an algorithm for aligning pairwise genomic sequences containing rearrangement events
    Te Chin Chu
    Institute of Information Science, Academia Sinica, National Taiwan University, Taipei, Taiwan
    Bioinformatics 25:2188-93. 2009

Collaborators

  • Wen Hsiung Li
  • Daryi Wang
  • Shu Miaw Chaw
  • Hsuan Cheng Huang
  • Chiou Rong Sheue
  • Shin Han Shiu
  • Tzyy Jen Chiou
  • Te Chin Chu
  • Chen Hua Lu
  • Wen yu Liu
  • Yao Ming Chang
  • Tzi Yuan Wang
  • Mei Yeh Jade Lu
  • Greg C Lee
  • Tsunglin Liu
  • Li Ching Hsieh
  • Yeh Hwa Wu
  • Maurice Sun Ben Ku
  • Hsin Hung Lin
  • Sean Chun Chang Chen
  • Di Rong Chen
  • Chun Ping Yu
  • Stella Maris Chen
  • Meng Ni Shen
  • Sean C C Chen
  • Hui Wen Yang
  • Maurice S B Ku
  • Huei Mien Ke
  • Yu Hsiang Chen
  • Hsing Yi Cho
  • Ya Wen Tsai
  • Kuo Yen Hung
  • Hsin Liang Chen
  • Shao Pei Chou
  • Yueh Chin Wu
  • Chih Kuan Chen
  • Yo Chia Chen
  • Sz Kai Ruan
  • Mei Yeh J Lu
  • Jeng Yi Li
  • Teh Yang Hwa
  • Chun Chieh A Shih
  • Ming Che Shih
  • Chi Tang Mao
  • Huang Mo Sung
  • Wei Yi Lin
  • June Wei Chen
  • Ching Ying Tseng
  • D T Lee
  • Shu I Lin

Detail Information

Publications12

  1. pmc Functional characterization of cellulases identified from the cow rumen fungus Neocallimastix patriciarum W5 by transcriptomic and secretomic analyses
    Tzi Yuan Wang
    Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan
    Biotechnol Biofuels 4:24. 2011
    ..abstract:..
  2. pmc SinicView: a visualization environment for comparisons of multiple nucleotide sequence alignment tools
    Arthur Chun Chieh Shih
    Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan
    BMC Bioinformatics 7:103. 2006
    ..Thus, a tool that allows cross comparison of the alignment results obtained by different tools simultaneously could help a biologist evaluate their correctness and accuracy...
  3. pmc Phylo-mLogo: an interactive and hierarchical multiple-logo visualization tool for alignment of many sequences
    Arthur Chun Chieh Shih
    Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan
    BMC Bioinformatics 8:63. 2007
    ..Although there are several tools available for visualization of very long sequence alignments, few of them are applicable to the alignments of many sequences...
  4. pmc Anatomical and transcriptional dynamics of maize embryonic leaves during seed germination
    Wen yu Liu
    Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan
    Proc Natl Acad Sci U S A 110:3979-84. 2013
    ..Our dataset provides an opportunity for hypothesizing the timing of regulatory actions, particularly in the context of KS development...
  5. pmc Assembler for de novo assembly of large genomes
    Te Chin Chu
    Institute of Information Science, Academia Sinica, Taipei 115, Taiwan
    Proc Natl Acad Sci U S A 110:E3417-24. 2013
    ....
  6. ncbi request reprint GS-Aligner: a novel tool for aligning genomic sequences using bit-level operations
    Arthur Chun Chieh Shih
    Institute of Information Science, Academia Sinica, Taipei, Taiwan
    Mol Biol Evol 20:1299-309. 2003
    ..The program and data can be downloaded from http://pondside.uchicago.edu/~lilab/ and http://webcollab.iis.sinica.edu.tw/~biocom...
  7. ncbi request reprint Transfer of chloroplast genomic DNA to mitochondrial genome occurred at least 300 MYA
    Daryi Wang
    Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan
    Mol Biol Evol 24:2040-8. 2007
    ..Our observations support the proposition of Richly and Leister (2004) that "primary insertions of organellar DNAs are large and then diverge and fragment over evolutionary time."..
  8. pmc Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing
    Li Ching Hsieh
    Genomics Research Center, Academia Sinica, Taipei 115, Taiwan
    Plant Physiol 151:2120-32. 2009
    ..This study represents a comprehensive expression profiling of Pi-responsive small RNAs and advances our understanding of the regulation of Pi homeostasis mediated by small RNAs...
  9. pmc Simultaneous amino acid substitutions at antigenic sites drive influenza A hemagglutinin evolution
    Arthur Chun Chieh Shih
    Institute of Information Science, Academia Sinica, Nankang, Taipei 115, Taiwan
    Proc Natl Acad Sci U S A 104:6283-8. 2007
    ....
  10. doi request reprint GR-Aligner: an algorithm for aligning pairwise genomic sequences containing rearrangement events
    Te Chin Chu
    Institute of Information Science, Academia Sinica, National Taiwan University, Taipei, Taiwan
    Bioinformatics 25:2188-93. 2009
    ..Global alignment tools are even less appropriate for these tasks since most of them are designed to align the conserved regions between sequences in a consistent order, i.e. they do not consider rearrangement events...
  11. doi request reprint The mitochondrial genome of the gymnosperm Cycas taitungensis contains a novel family of short interspersed elements, Bpu sequences, and abundant RNA editing sites
    Shu Miaw Chaw
    Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan
    Mol Biol Evol 25:603-15. 2008
    ..The evolutionary origin and invasion/duplication mechanism of the Bpu sequences in Cycas mtDNA are hypothesized and discussed...
  12. pmc Characterizing regulatory and functional differentiation between maize mesophyll and bundle sheath cells by transcriptomic analysis
    Yao Ming Chang
    Biodiversity Research Center, Academia Sinica, Taipei, Taiwan 115 Institute of Bioagricultural Science, National Chiayi University, Chiayi, Taiwan 600
    Plant Physiol 160:165-77. 2012
    ..This comprehensive data set will be useful for studying M/BS differentiation in regulation and function...