Arthur Chun Chieh Shih

Summary

Affiliation: Academia Sinica
Country: Taiwan

Publications

  1. ncbi Functional characterization of cellulases identified from the cow rumen fungus Neocallimastix patriciarum W5 by transcriptomic and secretomic analyses
    Tzi Yuan Wang
    Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan
    Biotechnol Biofuels 4:24. 2011
  2. ncbi SinicView: a visualization environment for comparisons of multiple nucleotide sequence alignment tools
    Arthur Chun Chieh Shih
    Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan
    BMC Bioinformatics 7:103. 2006
  3. ncbi Phylo-mLogo: an interactive and hierarchical multiple-logo visualization tool for alignment of many sequences
    Arthur Chun Chieh Shih
    Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan
    BMC Bioinformatics 8:63. 2007
  4. ncbi Transfer of chloroplast genomic DNA to mitochondrial genome occurred at least 300 MYA
    Daryi Wang
    Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan
    Mol Biol Evol 24:2040-8. 2007
  5. ncbi Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing
    Li Ching Hsieh
    Genomics Research Center, Academia Sinica, Taipei 115, Taiwan
    Plant Physiol 151:2120-32. 2009
  6. ncbi Simultaneous amino acid substitutions at antigenic sites drive influenza A hemagglutinin evolution
    Arthur Chun Chieh Shih
    Institute of Information Science, Academia Sinica, Nankang, Taipei 115, Taiwan
    Proc Natl Acad Sci U S A 104:6283-8. 2007
  7. ncbi The mitochondrial genome of the gymnosperm Cycas taitungensis contains a novel family of short interspersed elements, Bpu sequences, and abundant RNA editing sites
    Shu Miaw Chaw
    Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan
    Mol Biol Evol 25:603-15. 2008
  8. ncbi GR-Aligner: an algorithm for aligning pairwise genomic sequences containing rearrangement events
    Te Chin Chu
    Institute of Information Science, Academia Sinica, National Taiwan University, Taipei, Taiwan
    Bioinformatics 25:2188-93. 2009
  9. ncbi Characterizing regulatory and functional differentiation between maize mesophyll and bundle sheath cells by transcriptomic analysis
    Yao Ming Chang
    Biodiversity Research Center, Academia Sinica, Taipei, Taiwan 115 Institute of Bioagricultural Science, National Chiayi University, Chiayi, Taiwan 600
    Plant Physiol 160:165-77. 2012

Collaborators

  • Wen Hsiung Li
  • Shu Miaw Chaw
  • Tzyy Jen Chiou
  • Tzi Yuan Wang
  • Te Chin Chu
  • Yao Ming Chang
  • Li Ching Hsieh
  • Daryi Wang
  • Chen Hua Lu
  • Meng Ni Shen
  • Mei Yeh Jade Lu
  • Hui Wen Yang
  • Stella Maris Chen
  • Sean C C Chen
  • Maurice S B Ku
  • Wen yu Liu
  • Ming Che Shih
  • Chun Chieh A Shih
  • Hsin Liang Chen
  • Huei Mien Ke
  • Kuo Yen Hung
  • Sz Kai Ruan
  • Huang Mo Sung
  • Shao Pei Chou
  • Chih Kuan Chen
  • Yo Chia Chen
  • Jeng Yi Li
  • Chi Tang Mao
  • Yu Hsiang Chen
  • Yueh Chin Wu
  • Mei Yeh J Lu
  • Teh Yang Hwa
  • Hsing Yi Cho
  • Ya Wen Tsai
  • Greg C Lee
  • D T Lee
  • June Wei Chen
  • Ching Ying Tseng
  • Tsunglin Liu
  • Wei Yi Lin
  • Shu I Lin
  • Yu-Wei Wu
  • Chung-Shien Wu
  • Ya nan Wang
  • Chung Shien Wu
  • Ya-Nan Wang
  • Yu Wei Wu

Detail Information

Publications9

  1. ncbi Functional characterization of cellulases identified from the cow rumen fungus Neocallimastix patriciarum W5 by transcriptomic and secretomic analyses
    Tzi Yuan Wang
    Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan
    Biotechnol Biofuels 4:24. 2011
    ..abstract:..
  2. ncbi SinicView: a visualization environment for comparisons of multiple nucleotide sequence alignment tools
    Arthur Chun Chieh Shih
    Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan
    BMC Bioinformatics 7:103. 2006
    ..Thus, a tool that allows cross comparison of the alignment results obtained by different tools simultaneously could help a biologist evaluate their correctness and accuracy...
  3. ncbi Phylo-mLogo: an interactive and hierarchical multiple-logo visualization tool for alignment of many sequences
    Arthur Chun Chieh Shih
    Institute of Information Science, Academia Sinica, Taipei, 115, Taiwan
    BMC Bioinformatics 8:63. 2007
    ..Although there are several tools available for visualization of very long sequence alignments, few of them are applicable to the alignments of many sequences...
  4. ncbi Transfer of chloroplast genomic DNA to mitochondrial genome occurred at least 300 MYA
    Daryi Wang
    Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan
    Mol Biol Evol 24:2040-8. 2007
    ..Our observations support the proposition of Richly and Leister (2004) that "primary insertions of organellar DNAs are large and then diverge and fragment over evolutionary time."..
  5. ncbi Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing
    Li Ching Hsieh
    Genomics Research Center, Academia Sinica, Taipei 115, Taiwan
    Plant Physiol 151:2120-32. 2009
    ..This study represents a comprehensive expression profiling of Pi-responsive small RNAs and advances our understanding of the regulation of Pi homeostasis mediated by small RNAs...
  6. ncbi Simultaneous amino acid substitutions at antigenic sites drive influenza A hemagglutinin evolution
    Arthur Chun Chieh Shih
    Institute of Information Science, Academia Sinica, Nankang, Taipei 115, Taiwan
    Proc Natl Acad Sci U S A 104:6283-8. 2007
    ....
  7. ncbi The mitochondrial genome of the gymnosperm Cycas taitungensis contains a novel family of short interspersed elements, Bpu sequences, and abundant RNA editing sites
    Shu Miaw Chaw
    Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan
    Mol Biol Evol 25:603-15. 2008
    ..The evolutionary origin and invasion/duplication mechanism of the Bpu sequences in Cycas mtDNA are hypothesized and discussed...
  8. ncbi GR-Aligner: an algorithm for aligning pairwise genomic sequences containing rearrangement events
    Te Chin Chu
    Institute of Information Science, Academia Sinica, National Taiwan University, Taipei, Taiwan
    Bioinformatics 25:2188-93. 2009
    ..These outputs provide materials for studying possible evolutionary mechanisms and biological functionalities of the rearrangement...
  9. ncbi Characterizing regulatory and functional differentiation between maize mesophyll and bundle sheath cells by transcriptomic analysis
    Yao Ming Chang
    Biodiversity Research Center, Academia Sinica, Taipei, Taiwan 115 Institute of Bioagricultural Science, National Chiayi University, Chiayi, Taiwan 600
    Plant Physiol 160:165-77. 2012
    ..This comprehensive data set will be useful for studying M/BS differentiation in regulation and function...