Trees Juen Chuang

Summary

Affiliation: Academia Sinica
Country: Taiwan

Publications

  1. pmc Position-dependent correlations between DNA methylation and the evolutionary rates of mammalian coding exons
    Trees Juen Chuang
    Physical and Computational Genomics Division, Genomics Research Center, Academia Sinica, Taipei 115, Taiwan
    Proc Natl Acad Sci U S A 109:15841-6. 2012
  2. pmc CAPIH: a Web interface for comparative analyses and visualization of host-HIV protein-protein interactions
    Fan Kai Lin
    Division of Biostatistics and Bioinformatics, Institute of Population Health Sciences, National Health Research Institutes, Miaoli, 350 Taiwan, Republic of China
    BMC Microbiol 9:164. 2009
  3. pmc Different alternative splicing patterns are subject to opposite selection pressure for protein reading frame preservation
    Feng Chi Chen
    Division of Biostatistics and Bioinformatics, National Health Research Institutes, Miaoli County 350, Taiwan
    BMC Evol Biol 7:179. 2007
  4. pmc Identification and evolutionary analysis of novel exons and alternative splicing events using cross-species EST-to-genome comparisons in human, mouse and rat
    Feng Chi Chen
    Genomics Research Center, Academia Sinica, Academia Road, Nankang, Taipei 11529, Taiwan
    BMC Bioinformatics 7:136. 2006
  5. pmc The effects of multiple features of alternatively spliced exons on the K(A)/K(S) ratio test
    Feng Chi Chen
    Genomics Research Center, Academia Sinica, Academia Road, Nankang, Taipei 11529, Taiwan
    BMC Bioinformatics 7:259. 2006
  6. pmc LDGIdb: a database of gene interactions inferred from long-range strong linkage disequilibrium between pairs of SNPs
    Ming Chih Wang
    Genomics Research Center, Academia Sinica, Taipei, 11529, Taiwan
    BMC Res Notes 5:212. 2012
  7. pmc Identification and analysis of ancestral hominoid transcriptome inferred from cross-species transcript and processed pseudogene comparisons
    Yao Ting Huang
    Genomics Research Center, Academia Sinica, Taipei 11529, Taiwan
    Genome Res 18:1163-70. 2008
  8. pmc A Novel Framework for the Identification and Analysis of Duplicons between Human and Chimpanzee
    Trees Juen Chuang
    Genomics Research Center, Academia Sinica, Taipei, Taiwan
    Biomed Res Int 2013:264532. 2013

Collaborators

Detail Information

Publications8

  1. pmc Position-dependent correlations between DNA methylation and the evolutionary rates of mammalian coding exons
    Trees Juen Chuang
    Physical and Computational Genomics Division, Genomics Research Center, Academia Sinica, Taipei 115, Taiwan
    Proc Natl Acad Sci U S A 109:15841-6. 2012
    ..The first exons appear more prone to the mutagenic effects, whereas the other exons are more influenced by the regulatory effects of DNA methylation...
  2. pmc CAPIH: a Web interface for comparative analyses and visualization of host-HIV protein-protein interactions
    Fan Kai Lin
    Division of Biostatistics and Bioinformatics, Institute of Population Health Sciences, National Health Research Institutes, Miaoli, 350 Taiwan, Republic of China
    BMC Microbiol 9:164. 2009
    ..However, the differences in host-HIV-1 interactions between human and these model organisms have remained unexplored...
  3. pmc Different alternative splicing patterns are subject to opposite selection pressure for protein reading frame preservation
    Feng Chi Chen
    Division of Biostatistics and Bioinformatics, National Health Research Institutes, Miaoli County 350, Taiwan
    BMC Evol Biol 7:179. 2007
    ..Therefore, it is necessary to re-evaluate the evolutionary effects of such splicing patterns on frame preservation...
  4. pmc Identification and evolutionary analysis of novel exons and alternative splicing events using cross-species EST-to-genome comparisons in human, mouse and rat
    Feng Chi Chen
    Genomics Research Center, Academia Sinica, Academia Road, Nankang, Taipei 11529, Taiwan
    BMC Bioinformatics 7:136. 2006
    ..However, the extent of AS in mammals other than human and mouse is largely unknown, making it difficult to study AS evolution in mammals and its biomedical implications...
  5. pmc The effects of multiple features of alternatively spliced exons on the K(A)/K(S) ratio test
    Feng Chi Chen
    Genomics Research Center, Academia Sinica, Academia Road, Nankang, Taipei 11529, Taiwan
    BMC Bioinformatics 7:259. 2006
    ..Furthermore, which exon feature dominates the results of the KA/KS ratio test and whether multiple exon features have additive effects have remained unexplored...
  6. pmc LDGIdb: a database of gene interactions inferred from long-range strong linkage disequilibrium between pairs of SNPs
    Ming Chih Wang
    Genomics Research Center, Academia Sinica, Taipei, 11529, Taiwan
    BMC Res Notes 5:212. 2012
    ..A user-friendly web resource that integrates information about non-physical SNP linkages, gene annotations, SNP information, and SNP-disease associations may thus be a good reference for biomedical research...
  7. pmc Identification and analysis of ancestral hominoid transcriptome inferred from cross-species transcript and processed pseudogene comparisons
    Yao Ting Huang
    Genomics Research Center, Academia Sinica, Taipei 11529, Taiwan
    Genome Res 18:1163-70. 2008
    ....
  8. pmc A Novel Framework for the Identification and Analysis of Duplicons between Human and Chimpanzee
    Trees Juen Chuang
    Genomics Research Center, Academia Sinica, Taipei, Taiwan
    Biomed Res Int 2013:264532. 2013
    ..Phylogenetic analyses using duplicons suggested that most CNVs/SDs share common duplication ancestry. Many human/chimpanzee duplicons flank both ends of CNVs, which may be hotspots of nonallelic homologous recombination. ..