Sergey Nikolaev

Summary

Affiliation: University of Geneva
Country: Switzerland

Publications

  1. pmc Early history of mammals is elucidated with the ENCODE multiple species sequencing data
    Sergey Nikolaev
    Department of Genetic Medicine and Development, University of Geneva, Geneva, Switzerland
    PLoS Genet 3:e2. 2007
  2. pmc Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements
    Sergey I Nikolaev
    Department of Genetic Medicine and Development, University of Geneva Medical School, 1 rue Michel Servet, 1211 Geneva, Switzerland
    Proc Natl Acad Sci U S A 104:20443-8. 2007
  3. pmc Evolutionary forces shape the human RFPL1,2,3 genes toward a role in neocortex development
    Jérôme Bonnefont
    Department of Pathology and Immunology, Faculty of Medicine, University of Geneva, Rue Michel Servet 1, 1211 Geneva, Switzerland
    Am J Hum Genet 83:208-18. 2008
  4. ncbi Analysis of expressed sequence tags from a naked foraminiferan Reticulomyxa filosa
    Fabien Burki
    University of Geneva, Department of Zoology and Animal Biology, Geneva, Israel
    Genome 49:882-7. 2006
  5. pmc Detection of genomic variation by selection of a 9 mb DNA region and high throughput sequencing
    Sergey I Nikolaev
    Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland
    PLoS ONE 4:e6659. 2009
  6. pmc Phylogenomics reshuffles the eukaryotic supergroups
    Fabien Burki
    Department of Zoology and Animal Biology, University of Geneva, Geneva, Switzerland
    PLoS ONE 2:e790. 2007
  7. doi Characterization of mouse Dactylaplasia mutations: a model for human ectrodactyly SHFM3
    Marc Friedli
    Department of Genetic Medicine and Development, University of Geneva Medical School and University Hospitals of Geneva, 1 rue Michel Servet, 1211 Geneva 4, Switzerland
    Mamm Genome 19:272-8. 2008
  8. pmc Transcriptional and post-transcriptional profile of human chromosome 21
    Sergey I Nikolaev
    Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland
    Genome Res 19:1471-9. 2009
  9. ncbi Phylogenetic position of Multicilia marina and the evolution of Amoebozoa
    Sergey I Nikolaev
    Department of Evolutionary Biochemistry, AN Belozersky Institute of Physico Chemical Biology, Moscow State University, Russia
    Int J Syst Evol Microbiol 56:1449-58. 2006
  10. ncbi The testate lobose amoebae (order Arcellinida Kent, 1880) finally find their home within Amoebozoa
    Sergey I Nikolaev
    Department of Evolutionary Biochemistry, A N Belozersky Institute of Physico Chemical Biology, Moscow State University, Moscow, Russia
    Protist 156:191-202. 2005

Detail Information

Publications12

  1. pmc Early history of mammals is elucidated with the ENCODE multiple species sequencing data
    Sergey Nikolaev
    Department of Genetic Medicine and Development, University of Geneva, Geneva, Switzerland
    PLoS Genet 3:e2. 2007
    ..Thus, the two datasets support the Afrotheria hypothesis; however, none can reject both of the remaining topological alternatives...
  2. pmc Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements
    Sergey I Nikolaev
    Department of Genetic Medicine and Development, University of Geneva Medical School, 1 rue Michel Servet, 1211 Geneva, Switzerland
    Proc Natl Acad Sci U S A 104:20443-8. 2007
    ..This observation may explain why the evolution of CNCs fits the expectations of the nearly neutral theory less well than the evolution of nonsynonymous sites...
  3. pmc Evolutionary forces shape the human RFPL1,2,3 genes toward a role in neocortex development
    Jérôme Bonnefont
    Department of Pathology and Immunology, Faculty of Medicine, University of Geneva, Rue Michel Servet 1, 1211 Geneva, Switzerland
    Am J Hum Genet 83:208-18. 2008
    ..Thus, we propose that the recent emergence and multiplication of the RFPL1,2,3 genes contribute to changes in primate neocortex size and/or organization...
  4. ncbi Analysis of expressed sequence tags from a naked foraminiferan Reticulomyxa filosa
    Fabien Burki
    University of Geneva, Department of Zoology and Animal Biology, Geneva, Israel
    Genome 49:882-7. 2006
    ....
  5. pmc Detection of genomic variation by selection of a 9 mb DNA region and high throughput sequencing
    Sergey I Nikolaev
    Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland
    PLoS ONE 4:e6659. 2009
    ....
  6. pmc Phylogenomics reshuffles the eukaryotic supergroups
    Fabien Burki
    Department of Zoology and Animal Biology, University of Geneva, Geneva, Switzerland
    PLoS ONE 2:e790. 2007
    ..Yet, the composition of these large assemblages and their relationships remain controversial...
  7. doi Characterization of mouse Dactylaplasia mutations: a model for human ectrodactyly SHFM3
    Marc Friedli
    Department of Genetic Medicine and Development, University of Geneva Medical School and University Hospitals of Geneva, 1 rue Michel Servet, 1211 Geneva 4, Switzerland
    Mamm Genome 19:272-8. 2008
    ..Interestingly, the Dac2j mutation occurs within a highly conserved element that may represent a regulatory sequence for a neighboring gene...
  8. pmc Transcriptional and post-transcriptional profile of human chromosome 21
    Sergey I Nikolaev
    Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland
    Genome Res 19:1471-9. 2009
    ..We demonstrate that the combination of RNA fractionation and tiling arrays is a powerful method to assess the transcriptional and post-transcriptional properties of genomic regions...
  9. ncbi Phylogenetic position of Multicilia marina and the evolution of Amoebozoa
    Sergey I Nikolaev
    Department of Evolutionary Biochemistry, AN Belozersky Institute of Physico Chemical Biology, Moscow State University, Russia
    Int J Syst Evol Microbiol 56:1449-58. 2006
    ..This is the first report showing strong support for a clade containing all flagellated amoebozoans and we discuss the position of the root of the phylum Amoebozoa in the light of this result...
  10. ncbi The testate lobose amoebae (order Arcellinida Kent, 1880) finally find their home within Amoebozoa
    Sergey I Nikolaev
    Department of Evolutionary Biochemistry, A N Belozersky Institute of Physico Chemical Biology, Moscow State University, Moscow, Russia
    Protist 156:191-202. 2005
    ....
  11. ncbi Molecular phylogenetic analysis places Percolomonas cosmopolitus within Heterolobosea: evolutionary implications
    Sergey I Nikolaev
    Department of Evolutionary Biochemistry, A N Belozersky Institute of Physico Chemical Biology, Moscow State University, Moscow, Russia
    J Eukaryot Microbiol 51:575-81. 2004
    ..The first Bayesian analysis of a large taxon sampling of heterolobosean SSU rRNA genes clarifies the phylogenetic relationships within this group...
  12. pmc The twilight of Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid eukaryotes
    Sergey I Nikolaev
    A N Belozersky Institute of Physico Chemical Biology, Department of Evolutionary Biochemistry, Moscow State University, Moscow 119992, Russia
    Proc Natl Acad Sci U S A 101:8066-71. 2004
    ....