Samuel Cordey

Summary

Affiliation: University Hospital
Country: Switzerland

Publications

  1. doi request reprint Enterovirus and Parechovirus viraemia in young children presenting to the emergency room: Unrecognised and frequent
    S Cordey
    Laboratory of Virology, Infectious Diseases Service, University Hospitals of Geneva, Geneva, Switzerland University of Geneva Medical School, Geneva, Switzerland Electronic address
    J Clin Virol 68:69-72. 2015
  2. doi request reprint Toscana virus meningitis case in Switzerland: an example of the ezVIR bioinformatics pipeline utility for the identification of emerging viruses
    S Cordey
    Swiss National Reference Centre for Emerging Viral Infections, University of Geneva Hospitals, Geneva, Switzerland Laboratory of Virology, Infectious Diseases Service, University Hospitals of Geneva, Geneva, Switzerland University of Geneva Medical School, Geneva, Switzerland Electronic address
    Clin Microbiol Infect 21:387.e1-4. 2015
  3. pmc Pilot Evaluation of RT-PCR/Electrospray Ionization Mass Spectrometry (PLEX-ID/Flu assay) on Influenza-Positive Specimens
    Samuel Cordey
    Swiss National Reference Centre for Emerging Viral Diseases, University of Geneva Hospitals, Geneva, Switzerland
    Open Virol J 6:64-7. 2012
  4. pmc Identification of site-specific adaptations conferring increased neural cell tropism during human enterovirus 71 infection
    Samuel Cordey
    Laboratory of Virology, Division of Infectious Diseases and Division of Laboratory Medicine, University Hospitals of Geneva, Geneva, Switzerland
    PLoS Pathog 8:e1002826. 2012
  5. pmc Rhinovirus genome evolution during experimental human infection
    Samuel Cordey
    Laboratory of Virology, Division of Infectious Diseases and Division of Laboratory Medicine, University of Geneva Hospitals, Geneva, Switzerland
    PLoS ONE 5:e10588. 2010
  6. doi request reprint Analytical validation of a lymphocytic choriomeningitis virus real-time RT-PCR assay
    Samuel Cordey
    Swiss National Reference Centre for Emerging Viral Diseases, University of Geneva Hospitals, Geneva, Switzerland
    J Virol Methods 177:118-22. 2011
  7. doi request reprint Simultaneous detection of parainfluenza viruses 1 and 3 by real-time reverse transcription-polymerase chain reaction
    Samuel Cordey
    Laboratory of Virology, Division of Infectious Diseases, University of Geneva Hospitals, 24 Rue Micheli du Crest, 1211 Geneva 14, Switzerland
    J Virol Methods 156:166-8. 2009
  8. pmc The cis-acting replication elements define human enterovirus and rhinovirus species
    Samuel Cordey
    Central Laboratory of Virology, Division of Infectious Diseases, University of Geneva Hospitals, 1211 Geneva 14, Switzerland
    RNA 14:1568-78. 2008
  9. pmc Rhinovirus genome variation during chronic upper and lower respiratory tract infections
    Caroline Tapparel
    Laboratory of Virology, Division of Infectious Diseases and Division of Laboratory Medicine, University of Geneva Hospitals, Geneva, Switzerland
    PLoS ONE 6:e21163. 2011
  10. pmc New molecular detection tools adapted to emerging rhinoviruses and enteroviruses
    Caroline Tapparel
    Laboratory of Virology, Division of Infectious Diseases, University of Geneva Hospitals, 24 Rue Micheli du Crest, 1211 Geneva 14, Switzerland
    J Clin Microbiol 47:1742-9. 2009

Collaborators

Detail Information

Publications20

  1. doi request reprint Enterovirus and Parechovirus viraemia in young children presenting to the emergency room: Unrecognised and frequent
    S Cordey
    Laboratory of Virology, Infectious Diseases Service, University Hospitals of Geneva, Geneva, Switzerland University of Geneva Medical School, Geneva, Switzerland Electronic address
    J Clin Virol 68:69-72. 2015
    ..Human Enterovirus (EV) and Parechovirus (HPeV) are well recognised as agents causing disease in neonates, but their importance is poorly described in the general paediatric population consulting with a suspicion of infection...
  2. doi request reprint Toscana virus meningitis case in Switzerland: an example of the ezVIR bioinformatics pipeline utility for the identification of emerging viruses
    S Cordey
    Swiss National Reference Centre for Emerging Viral Infections, University of Geneva Hospitals, Geneva, Switzerland Laboratory of Virology, Infectious Diseases Service, University Hospitals of Geneva, Geneva, Switzerland University of Geneva Medical School, Geneva, Switzerland Electronic address
    Clin Microbiol Infect 21:387.e1-4. 2015
    ..TOSV could be unequivocally considered as the aetiological agent, proving the potential of ezVIR to improve standard diagnostics in cases of infection with uncommon or emerging viruses. ..
  3. pmc Pilot Evaluation of RT-PCR/Electrospray Ionization Mass Spectrometry (PLEX-ID/Flu assay) on Influenza-Positive Specimens
    Samuel Cordey
    Swiss National Reference Centre for Emerging Viral Diseases, University of Geneva Hospitals, Geneva, Switzerland
    Open Virol J 6:64-7. 2012
    ....
  4. pmc Identification of site-specific adaptations conferring increased neural cell tropism during human enterovirus 71 infection
    Samuel Cordey
    Laboratory of Virology, Division of Infectious Diseases and Division of Laboratory Medicine, University Hospitals of Geneva, Geneva, Switzerland
    PLoS Pathog 8:e1002826. 2012
    ..Taken together, our results show that the VP1 BC loop region of EV71 plays a critical role in cell tropism independent of EV71 lineage and, thus, may have contributed to dissemination and neurotropism in the immunocompromised patient...
  5. pmc Rhinovirus genome evolution during experimental human infection
    Samuel Cordey
    Laboratory of Virology, Division of Infectious Diseases and Division of Laboratory Medicine, University of Geneva Hospitals, Geneva, Switzerland
    PLoS ONE 5:e10588. 2010
    ..In vivo, HRV generate new variants rapidly during the course of an acute infection due to mutations that accumulate in hot spot regions located at the capsid level, as well as in 2C and 3C genes...
  6. doi request reprint Analytical validation of a lymphocytic choriomeningitis virus real-time RT-PCR assay
    Samuel Cordey
    Swiss National Reference Centre for Emerging Viral Diseases, University of Geneva Hospitals, Geneva, Switzerland
    J Virol Methods 177:118-22. 2011
    ..This study validates a specific and sensitive real-time RT-PCR assay for the diagnosis of LCMV infections. Results showed that LCMV infections are extremely rare in hospitalized patients western in Switzerland...
  7. doi request reprint Simultaneous detection of parainfluenza viruses 1 and 3 by real-time reverse transcription-polymerase chain reaction
    Samuel Cordey
    Laboratory of Virology, Division of Infectious Diseases, University of Geneva Hospitals, 24 Rue Micheli du Crest, 1211 Geneva 14, Switzerland
    J Virol Methods 156:166-8. 2009
    ..The HPIV-1+3 combination constitutes a more rapid, more sensitive, and less expensive alternative than classical or multiplex real-time RT-PCR assays usually used in clinical laboratories...
  8. pmc The cis-acting replication elements define human enterovirus and rhinovirus species
    Samuel Cordey
    Central Laboratory of Virology, Division of Infectious Diseases, University of Geneva Hospitals, 1211 Geneva 14, Switzerland
    RNA 14:1568-78. 2008
    ..Therefore, we propose that cre element could be considered as an additional criterion for human rhinovirus and enterovirus classification...
  9. pmc Rhinovirus genome variation during chronic upper and lower respiratory tract infections
    Caroline Tapparel
    Laboratory of Virology, Division of Infectious Diseases and Division of Laboratory Medicine, University of Geneva Hospitals, Geneva, Switzerland
    PLoS ONE 6:e21163. 2011
    ....
  10. pmc New molecular detection tools adapted to emerging rhinoviruses and enteroviruses
    Caroline Tapparel
    Laboratory of Virology, Division of Infectious Diseases, University of Geneva Hospitals, 24 Rue Micheli du Crest, 1211 Geneva 14, Switzerland
    J Clin Microbiol 47:1742-9. 2009
    ..This investigation provides a comprehensive toolbox for accurate molecular identification of the different HEV and HRV circulating in humans...
  11. pmc New respiratory enterovirus and recombinant rhinoviruses among circulating picornaviruses
    Caroline Tapparel
    University of Geneva Hospitals, Switzerland
    Emerg Infect Dis 15:719-26. 2009
    ..This study clarifies the diversity and explains the reasons for evolution of these viruses...
  12. pmc New complete genome sequences of human rhinoviruses shed light on their phylogeny and genomic features
    Caroline Tapparel
    Central Laboratory of Virology, Division of Infectious Diseases, University of Geneva Hospitals, Geneva, Switzerland
    BMC Genomics 8:224. 2007
    ..The lack of HRV full-length genome sequences and the absence of analysis comparing picornaviruses at the whole genome level limit our knowledge of the genomic features supporting these differences...
  13. doi request reprint Ebola virus disease diagnosis by real-time RT-PCR: A comparative study of 11 different procedures
    Pascal Cherpillod
    Swiss National Reference Centre for Emerging Viral Diseases, Geneva University Hospitals, Geneva, Switzerland Laboratory of Virology, Geneva University Hospitals, Geneva, Switzerland University of Geneva Medical School, Geneva, Switzerland
    J Clin Virol 77:9-14. 2016
    ..While several of these assays were developed during the unprecedented 2013-2015 Ebola virus disease outbreak in West Africa, few were applied in the field...
  14. doi request reprint Human three-dimensional engineered neural tissue reveals cellular and molecular events following cytomegalovirus infection
    Erika Cosset
    Laboratory of Immuno Hematology, Department of Genetic and Laboratory Medicine, Geneva University Hospital, University of Geneva, Geneva, Switzerland Department of Pathology and Immunology, Faculty of Medicine, University of Geneva, Geneva, Switzerland
    Biomaterials 53:296-308. 2015
    ..To the best of our knowledge this system represents the first human brain-like tissue able to provide a more physiologically model for studying HCMV infection. ..
  15. pmc Comprehensive human virus screening using high-throughput sequencing with a user-friendly representation of bioinformatics analysis: a pilot study
    Tom J Petty
    Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland Swiss Institute of Bioinformatics, Geneva, Switzerland
    J Clin Microbiol 52:3351-61. 2014
    ....
  16. doi request reprint Clinical features and viral kinetics in a rapidly cured patient with Ebola virus disease: a case report
    Manuel Schibler
    Division of Infectious Diseases, Geneva University Hospitals, Geneva, Switzerland Laboratory of Virology and Swiss Reference Centre for Emerging Viral Diseases, Geneva University Hospitals, Geneva, Switzerland
    Lancet Infect Dis 15:1034-40. 2015
    ..We describe the clinical, biological, and virological follow-up of a case of Ebola virus disease...
  17. pmc T lymphocytes promote the antiviral and inflammatory responses of airway epithelial cells
    Lan Jornot
    Division of Pulmonary Medicine, Geneva University Hospitals, Geneva, Switzerland
    PLoS ONE 6:e26293. 2011
    ..T cells modulate the antiviral and inflammatory responses of airway epithelial cells to human rhinoviruses (HRV)...
  18. ncbi request reprint Further characterization of a paramyxovirus transcription initiation signal: search for required nucleotides upstream and importance of the N phase context
    Samuel Cordey
    Department of Microbiology and Molecular Medicine, University of Geneva Medical School, CMU, 1 rue Michel Servet, CH 1211 Geneva 4, Switzerland
    J Gen Virol 88:1555-64. 2007
    ..In contrast, it was observed that changing the gs1 N phase context progressively decreased transcription by five- to tenfold. These results are discussed in relation to two different mechanisms of transcription initiation...
  19. ncbi request reprint Transcribing paramyxovirus RNA polymerase engages the template at its 3' extremity
    Samuel Cordey
    Department of Microbiology and Molecular Medicine, University of Geneva Medical School, CMU, 1 rue Michel Servet, CH 1211 Geneva 4, Switzerland
    J Gen Virol 87:665-72. 2006
    ..Implication of this observation for the nature of the Sendai virus RNA polymerase and for the mechanism by which it synthesizes mRNAs or replication products is presented...
  20. ncbi request reprint Nature of a paramyxovirus replication promoter influences a nearby transcription signal
    Diane Vulliémoz
    Department of Microbiology and Molecular Medicine, University of Geneva Medical School, CMU, 1 rue Michel Servet, CH 1211 Geneva 4, Switzerland
    J Gen Virol 86:171-80. 2005
    ..The manner in which transcription and replication initiations influence each other is discussed...