Jochen Klumpp

Summary

Affiliation: Swiss Federal Institute of Technology
Country: Switzerland

Publications

  1. doi request reprint Bacteriophage functional genomics and its role in bacterial pathogen detection
    Jochen Klumpp
    Institute of Food, Nutrition and Health, ETH Zurich, Zurich, Switzerland
    Brief Funct Genomics 12:354-65. 2013
  2. pmc Whole genome sequencing and comparative genomic analyses of two Vibrio cholerae O139 Bengal-specific Podoviruses to other N4-like phages reveal extensive genetic diversity
    Derrick E Fouts
    J Craig Venter Institute, Rockville, MD, USA
    Virol J 10:165. 2013
  3. doi request reprint The SPO1-related bacteriophages
    Jochen Klumpp
    Institute of Food, Nutrition and Health, ETH Zurich, Schmelzbergstrasse 7, Zurich, Switzerland
    Arch Virol 155:1547-61. 2010
  4. pmc The terminally redundant, nonpermuted genome of Listeria bacteriophage A511: a model for the SPO1-like myoviruses of gram-positive bacteria
    Jochen Klumpp
    Institute of Food Science and Nutrition, ETH Zurich, Schmelzbergstrasse 7, 8092 Zurich, Switzerland
    J Bacteriol 190:5753-65. 2008
  5. doi request reprint Long tail fibres of the novel broad-host-range T-even bacteriophage S16 specifically recognize Salmonella OmpC
    Roger Marti
    Institute of Food, Nutrition and Health, ETH Zurich, Schmelzbergstrasse 7, 8092 Zurich, Switzerland
    Mol Microbiol 87:818-34. 2013
  6. pmc Bacteriophage P70: unique morphology and unrelatedness to other Listeria bacteriophages
    Martina M Schmuki
    Institute of Food, Nutrition and Health, ETH Zurich, Zurich, Switzerland
    J Virol 86:13099-102. 2012
  7. doi request reprint Biocontrol of Salmonella Typhimurium in RTE foods with the virulent bacteriophage FO1-E2
    Susanne Guenther
    Institute of Food, Nutrition, and Health, ETH Zurich, 8092 Zurich, Switzerland
    Int J Food Microbiol 154:66-72. 2012
  8. pmc Brochothrix thermosphacta bacteriophages feature heterogeneous and highly mosaic genomes and utilize unique prophage insertion sites
    Samuel Kilcher
    Institute of Food, Nutrition and Health, ETH Zurich, 8092 Zurich, Switzerland
    J Bacteriol 192:5441-53. 2010
  9. doi request reprint PEGylation of bacteriophages increases blood circulation time and reduces T-helper type 1 immune response
    Kwang Pyo Kim
    Institute of Food Science and Nutrition, ETH Zurich, Schmelzbergstrasse 7, 8092 Zurich, Switzerland
    Microb Biotechnol 1:247-57. 2008
  10. doi request reprint Endolysins as antimicrobials
    Daniel C Nelson
    Institute for Bioscience and Biotechnology Research, University of Maryland, Rockville, MD, USA
    Adv Virus Res 83:299-365. 2012

Collaborators

Detail Information

Publications14

  1. doi request reprint Bacteriophage functional genomics and its role in bacterial pathogen detection
    Jochen Klumpp
    Institute of Food, Nutrition and Health, ETH Zurich, Zurich, Switzerland
    Brief Funct Genomics 12:354-65. 2013
    ....
  2. pmc Whole genome sequencing and comparative genomic analyses of two Vibrio cholerae O139 Bengal-specific Podoviruses to other N4-like phages reveal extensive genetic diversity
    Derrick E Fouts
    J Craig Venter Institute, Rockville, MD, USA
    Virol J 10:165. 2013
    ..We aimed at a complete molecular characterization of both phages and elucidation of their genetic and structural differences and assessment of their genetic relatedness to the N4-like phage group...
  3. doi request reprint The SPO1-related bacteriophages
    Jochen Klumpp
    Institute of Food, Nutrition and Health, ETH Zurich, Schmelzbergstrasse 7, Zurich, Switzerland
    Arch Virol 155:1547-61. 2010
    ..The number of phages isolated consistent with these parameters is large, suggesting a ubiquitous nature of this group of viruses...
  4. pmc The terminally redundant, nonpermuted genome of Listeria bacteriophage A511: a model for the SPO1-like myoviruses of gram-positive bacteria
    Jochen Klumpp
    Institute of Food Science and Nutrition, ETH Zurich, Schmelzbergstrasse 7, 8092 Zurich, Switzerland
    J Bacteriol 190:5753-65. 2008
    ....
  5. doi request reprint Long tail fibres of the novel broad-host-range T-even bacteriophage S16 specifically recognize Salmonella OmpC
    Roger Marti
    Institute of Food, Nutrition and Health, ETH Zurich, Schmelzbergstrasse 7, 8092 Zurich, Switzerland
    Mol Microbiol 87:818-34. 2013
    ..The S16 LTF represents a highly specific affinity reagent useful for cell decoration and labelling, as well as bacterial immobilization and separation...
  6. pmc Bacteriophage P70: unique morphology and unrelatedness to other Listeria bacteriophages
    Martina M Schmuki
    Institute of Food, Nutrition and Health, ETH Zurich, Zurich, Switzerland
    J Virol 86:13099-102. 2012
    ..The P70 genome contains 67,170 bp and 119 open reading frames (ORFs). Our analyses suggest that P70 represents an archetype of virus unrelated to other known Listeria bacteriophages...
  7. doi request reprint Biocontrol of Salmonella Typhimurium in RTE foods with the virulent bacteriophage FO1-E2
    Susanne Guenther
    Institute of Food, Nutrition, and Health, ETH Zurich, 8092 Zurich, Switzerland
    Int J Food Microbiol 154:66-72. 2012
    ..Altogether, our data show that virulent phages such as FO1-E2 offer an effective biocontrol measure for Salmonella in foods...
  8. pmc Brochothrix thermosphacta bacteriophages feature heterogeneous and highly mosaic genomes and utilize unique prophage insertion sites
    Samuel Kilcher
    Institute of Food, Nutrition and Health, ETH Zurich, 8092 Zurich, Switzerland
    J Bacteriol 192:5441-53. 2010
    ..Interestingly, both genes are reconstituted by phage sequence...
  9. doi request reprint PEGylation of bacteriophages increases blood circulation time and reduces T-helper type 1 immune response
    Kwang Pyo Kim
    Institute of Food Science and Nutrition, ETH Zurich, Schmelzbergstrasse 7, 8092 Zurich, Switzerland
    Microb Biotechnol 1:247-57. 2008
    ..This is the first study demonstrating that PEGylation can increases survival of infective phage by delaying immune responses, and indicates that this approach can increase efficacy of bacteriophage therapy...
  10. doi request reprint Endolysins as antimicrobials
    Daniel C Nelson
    Institute for Bioscience and Biotechnology Research, University of Maryland, Rockville, MD, USA
    Adv Virus Res 83:299-365. 2012
    ..To put phage endolysin work in a broader context, this chapter includes relevant studies of other well-characterized PG hydrolase antimicrobials...
  11. pmc Genome sequence of Listeria monocytogenes Scott A, a clinical isolate from a food-borne listeriosis outbreak
    Yves Briers
    Institute of Food, Nutrition and Health, ETH Zurich, Schmelzbergstrasse 7, CH 8092 Zurich, Switzerland
    J Bacteriol 193:4284-5. 2011
    ..We present the genome sequence of Listeria monocytogenes Scott A, a widely distributed and frequently used serovar 4b clinical isolate from the 1983 listeriosis outbreak in Massachusetts...
  12. pmc Complete Nucleotide Sequence and Molecular Characterization of Bacillus Phage TP21 and its Relatedness to Other Phages with the Same Name
    Jochen Klumpp
    Institute of Food, Nutrition and Health, ETH Zurich, 8092 Zurich, Switzerland E mail
    Viruses 2:961-71. 2010
    ..TP21-H), as estimated from phage dimensions. For reasons of clarity, we suggest renaming the different TP21 isolates...
  13. doi request reprint Analysis of the intestinal microbiome of a recovered Clostridium difficile patient after fecal transplantation
    Felix Broecker
    Institute of Medical Microbiology, University of Zurich, University Hospital Zurich, Zurich, Switzerland
    Digestion 88:243-51. 2013
    ..We performed metagenomic sequencing on stool samples to assess if there are indications for recolonization with C. difficile and changes in the gut microbiota after FMT...
  14. ncbi request reprint Enterobacter sakazakii bacteriophages can prevent bacterial growth in reconstituted infant formula
    Kwang Pyo Kim
    Food Microbiology Laboratory, Institute of Food Science and Nutrition, Schmelzbergstrasse 7, ETH Zurich, 8092 Zurich, Switzerland
    Int J Food Microbiol 115:195-203. 2007
    ..We conclude that application of specific bacteriophages may provide a means for efficient prevention of E. sakazakii infection through reconstituted infant formula...