C Hoogland

Summary

Affiliation: Swiss Institute of Bioinformatics
Country: Switzerland

Publications

  1. doi A suite of tools to analyse and publish 2-DE data
    Christine Hoogland
    Proteome Informatics Group, Swiss Institute of Bioinformatics, Geneva, Switzerland
    Proteomics 8:4907-9. 2008
  2. ncbi SWISS-2DPAGE, ten years later
    Christine Hoogland
    Swiss Institute of Bioinformatics, Geneva, Switzerland
    Proteomics 4:2352-6. 2004
  3. ncbi Two-dimensional electrophoresis resources available from ExPASy
    C Hoogland
    Swiss Institute of Bioinformatics, Geneva
    Electrophoresis 20:3568-71. 1999
  4. ncbi SPS' Digest: the Swiss Proteomics Society selection of proteomics articles
    Christine Hoogland
    Swiss Institute of Bioinformatics, CMU, I Michel Servet, CH 1211 Geneva, Switzerland
    Proteomics 5:3045-7. 2005
  5. pmc The 1999 SWISS-2DPAGE database update
    C Hoogland
    Swiss Institute of Bioinformatics, 1 rue Michel Servet, CH 1211 Geneve 4, Switzerland
    Nucleic Acids Res 28:286-8. 2000
  6. pmc The SWISS-2DPAGE database: what has changed during the last year
    C Hoogland
    Swiss Institute of Bioinformatics, c o Medical Informatics Division, Geneva University Hospital, 24 Rue Micheli du Crest, 1211 Geneva 14, Switzerland
    Nucleic Acids Res 27:289-91. 1999
  7. doi The World-2DPAGE Constellation to promote and publish gel-based proteomics data through the ExPASy server
    Christine Hoogland
    Proteome Informatics Group, Swiss Institute of Bioinformatics, CMU, 1 Michel Servet, CH 1211 Geneva 4, Switzerland
    J Proteomics 71:245-8. 2008
  8. ncbi A molecular scanner to automate proteomic research and to display proteome images
    P A Binz
    Swiss Institute of Bioinformatics, University Medical Center, Geneva, Switzerland
    Anal Chem 71:4981-8. 1999
  9. ncbi New perspectives in the Escherichia coli proteome investigation
    L Tonella
    Central Clinical Chemistry Laboratory, Geneva University Hospital, 24 Rue Michell du Crest, 1211 Geneva 14, Switzerland
    Proteomics 1:409-23. 2001
  10. ncbi The mouse SWISS-2D PAGE database: a tool for proteomics study of diabetes and obesity
    J C Sanchez
    Clinical Chemistry Laboratory, University Hospital, Geneva, Switzerland
    Proteomics 1:136-63. 2001

Collaborators

Detail Information

Publications23

  1. doi A suite of tools to analyse and publish 2-DE data
    Christine Hoogland
    Proteome Informatics Group, Swiss Institute of Bioinformatics, Geneva, Switzerland
    Proteomics 8:4907-9. 2008
    ..This short communication highlights in a single and summarised view, this workflow and the current bioinformatics solutions developed by the Proteome Informatics Group at the Swiss Institute of Bioinformatics...
  2. ncbi SWISS-2DPAGE, ten years later
    Christine Hoogland
    Swiss Institute of Bioinformatics, Geneva, Switzerland
    Proteomics 4:2352-6. 2004
    ..With a high level of annotation and integration with other relevant databases, SWISS-2DPAGE is a reference source in the proteomics world. Queries to SWISS-2DPAGE database currently reach 1000 hits per day...
  3. ncbi Two-dimensional electrophoresis resources available from ExPASy
    C Hoogland
    Swiss Institute of Bioinformatics, Geneva
    Electrophoresis 20:3568-71. 1999
    ..These resources include the SWISS-2DPAGE database, 2-DE software packages, 2-DE technical and educational services, as well as indexes and search engines for 2-DE related sites over the Internet...
  4. ncbi SPS' Digest: the Swiss Proteomics Society selection of proteomics articles
    Christine Hoogland
    Swiss Institute of Bioinformatics, CMU, I Michel Servet, CH 1211 Geneva, Switzerland
    Proteomics 5:3045-7. 2005
    ..The purpose of SPS' Digest is to gather a selection of proteomics articles, to categorize them, and to make the list available on a periodic basis through a web page and email alerts...
  5. pmc The 1999 SWISS-2DPAGE database update
    C Hoogland
    Swiss Institute of Bioinformatics, 1 rue Michel Servet, CH 1211 Geneve 4, Switzerland
    Nucleic Acids Res 28:286-8. 2000
    ....
  6. pmc The SWISS-2DPAGE database: what has changed during the last year
    C Hoogland
    Swiss Institute of Bioinformatics, c o Medical Informatics Division, Geneva University Hospital, 24 Rue Micheli du Crest, 1211 Geneva 14, Switzerland
    Nucleic Acids Res 27:289-91. 1999
    ..Six new maps have been added, and new functions to access the data have been provided through the ExPASy server. Finally, an important change concerns the database funding source...
  7. doi The World-2DPAGE Constellation to promote and publish gel-based proteomics data through the ExPASy server
    Christine Hoogland
    Proteome Informatics Group, Swiss Institute of Bioinformatics, CMU, 1 Michel Servet, CH 1211 Geneva 4, Switzerland
    J Proteomics 71:245-8. 2008
    ..The lack of necessary informatics infrastructure to build and run a dedicated website is no longer an obstacle to make proteomics data publicly accessible on the Internet...
  8. ncbi A molecular scanner to automate proteomic research and to display proteome images
    P A Binz
    Swiss Institute of Bioinformatics, University Medical Center, Geneva, Switzerland
    Anal Chem 71:4981-8. 1999
    ..This "MS-imaging" method represents a major step toward the development of a clinical molecular scanner...
  9. ncbi New perspectives in the Escherichia coli proteome investigation
    L Tonella
    Central Clinical Chemistry Laboratory, Geneva University Hospital, 24 Rue Michell du Crest, 1211 Geneva 14, Switzerland
    Proteomics 1:409-23. 2001
    ..coli cell. Moreover, the six new E. coli SWISS-2D PAGE maps (pH 4-5, 4.5-5.5, 5-6, 5.5-6.7, 6-9 and 6-11) presented here displayed altogether more than 70% of the entire E. coli proteome...
  10. ncbi The mouse SWISS-2D PAGE database: a tool for proteomics study of diabetes and obesity
    J C Sanchez
    Clinical Chemistry Laboratory, University Hospital, Geneva, Switzerland
    Proteomics 1:136-63. 2001
    ..SWISS-2D PAGE can be accessed through the World Wide Web (WWW) network on the ExPASy molecular biology server (http://www.expasy.ch/ ch2d/)...
  11. ncbi Make2ddb: a simple package to set up a two-dimensional electrophoresis database for the World Wide Web
    C Hoogland
    Medical Informatics Division, Geneva University Hospital, Switzerland
    Electrophoresis 18:2755-8. 1997
    ..By preparing the data and programs that are required to create a federated 2-DE database, the Make2ddb package, described here, helps to build such a database on the user own World Wide Web site...
  12. ncbi Improving protein identification from peptide mass fingerprinting through a parameterized multi-level scoring algorithm and an optimized peak detection
    R Gras
    Swiss Institute of Bioinformatics, University Medical Center, Geneva, Switzerland
    Electrophoresis 20:3535-50. 1999
    ..We tested the resulting scoring calculation on a test set of ten proteins and compared the identification results with those of other peptide mass fingerprinting programs...
  13. ncbi '98 Escherichia coli SWISS-2DPAGE database update
    L Tonella
    Clinical Chemistry Laboratory, Geneva University Hospital, Switzerland
    Electrophoresis 19:1960-71. 1998
    ..Many proteins have been identified using more than one technique. Faster progress in the E. coli proteome project will now be possible with advances in biochemical methodology and with the completion of the entire E. coli genome...
  14. ncbi The establishment of a human liver nuclei two-dimensional electrophoresis reference map
    E Jung
    Central Clinical Chemistry Laboratory, Geneva University Hospital, Switzerland
    Electrophoresis 21:3483-7. 2000
    ..The human liver nuclei 2-DE reference map is now included in the SWISS-2DPAGE database, which can be accessed through the ExPASy server (http://www.expasy.ch/ch2d/)...
  15. doi MIAPEGelDB, a web-based submission tool and public repository for MIAPE gel electrophoresis documents
    Xavier Robin
    Proteome Informatics Group, Swiss Institute of Bioinformatics, Geneva, Switzerland
    J Proteomics 71:249-51. 2008
    ..After publication by their author, documents in MIAPEGelDB can be viewed in HTML or plain text formats, and further used through stable URL links from remote resources. MIAPEGelDB is accessible at: http://miapegeldb.expasy.org/...
  16. pmc ExPASy: The proteomics server for in-depth protein knowledge and analysis
    Elisabeth Gasteiger
    Swiss Institute of Bioinformatics, Centre Medical Universitaire, 1 rue Michel Servet, 1211 Geneva 4, Switzerland
    Nucleic Acids Res 31:3784-8. 2003
    ..ExPASy started to operate in 1993, as the first WWW server in the field of life sciences. In addition to the main site in Switzerland, seven mirror sites in different continents currently serve the user community...
  17. ncbi The molecular scanner: concept and developments
    Pierre Alain Binz
    Swiss Institute of Bioinformatics, Proteome Informatics Group, CMU, Michel Servet 1, 1211 Geneva, Switzerland
    Curr Opin Biotechnol 15:17-23. 2004
    ..Clinical applications of the molecular scanner have also started to be developed for disease diagnosis in biological material...
  18. ncbi The Make 2D-DB II package: conversion of federated two-dimensional gel electrophoresis databases into a relational format and interconnection of distributed databases
    Khaled Mostaguir
    Swiss Institute of Bioinformatics, Centre Medical Universitaire CMU, 1 rue Michel Servet, 1211 Geneva 4, Switzerland
    Proteomics 3:1441-4. 2003
    ..Such an environment should be able to fulfill the different needs and requirements arising from both the growing use of 2-DE techniques and the increasing amount of distributed experimental data...
  19. ncbi Further steps towards data standardisation: the Proteomic Standards Initiative HUPO 3(rd) annual congress, Beijing 25-27(th) October, 2004
    Sandra Orchard
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Proteomics 5:337-9. 2005
    ..Parallel sessions allowed the three work groups to present their progress to interested parties and to collect feedback from groups already implementing the available formats...
  20. ncbi Correlation of proteomic and transcriptomic profiles of Staphylococcus aureus during the post-exponential phase of growth
    Alexander Scherl
    Biomedical Proteomics Research Group, Geneva University Hospitals, Geneva, Switzerland
    J Microbiol Methods 60:247-57. 2005
    ..The simultaneous large-scale analysis of transcriptomes and proteomes enables a global and holistic view of the S. aureus biology, allowing the parallel study of multiple active events in an organism...
  21. ncbi Autumn 2005 Workshop of the Human Proteome Organisation Proteomics Standards Initiative (HUPO-PSI) Geneva, September, 4-6, 2005
    Sandra Orchard
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Proteomics 6:738-41. 2006
    ..Common to all these efforts is the field of protein modifications, and work has been initiated to establish an ontology in this field that can be used by both workers in the field of proteomics and the wider scientific community...
  22. doi Guidelines for reporting the use of gel electrophoresis in proteomics
    Frank Gibson
    Nat Biotechnol 26:863-4. 2008
  23. ncbi Hydrogen/deuterium exchange for higher specificity of protein identification by peptide mass fingerprinting
    Willy V Bienvenut
    Central Clinical Chemistry Laboratory, Geneva University Hospital, Rue Micheli du Crest 24, CH 1211 Geneva 14, Switzerland
    Rapid Commun Mass Spectrom 16:616-26. 2002
    ..Then, information related to primary sequence obtained with this technique could help to identify proteins with high confidence without any expensive tandem mass spectrometry instruments...