Alexandre Gattiker

Summary

Affiliation: Swiss Institute of Bioinformatics
Country: Switzerland

Publications

  1. ncbi request reprint Automated annotation of microbial proteomes in SWISS-PROT
    Alexandre Gattiker
    Swiss Prot group, Swiss Institute of Bioinformatics, 1 rue Michel Servet, CH 1211 Geneva 4, Switzerland
    Comput Biol Chem 27:49-58. 2003
  2. pmc ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins
    Edouard De Castro
    Swiss Institute of Bioinformatics, 1 rue Michel Servet, CH 1211 Geneva 4, Switzerland
    Nucleic Acids Res 34:W362-5. 2006
  3. pmc The Microbe browser for comparative genomics
    Alexandre Gattiker
    Swiss Institute of Bioinformatics, School of Life Sciences, Ecole Polytechnique Federale de Lausanne, 1015 Lausanne, Switzerland
    Nucleic Acids Res 37:W296-9. 2009
  4. ncbi request reprint ScanProsite: a reference implementation of a PROSITE scanning tool
    Alexandre Gattiker
    Swiss Institute of Bioinformatics, Geneva, Switzerland
    Appl Bioinformatics 1:107-8. 2002
  5. ncbi request reprint The Swiss-Prot variant page and the ModSNP database: a resource for sequence and structure information on human protein variants
    Yum L Yip
    Swiss Prot group, Swiss Institute of Bioinformatics, Centre Medical Universitaire, Geneva, Switzerland
    Hum Mutat 23:464-70. 2004
  6. pmc ExPASy: The proteomics server for in-depth protein knowledge and analysis
    Elisabeth Gasteiger
    Swiss Institute of Bioinformatics, Centre Medical Universitaire, 1 rue Michel Servet, 1211 Geneva 4, Switzerland
    Nucleic Acids Res 31:3784-8. 2003
  7. ncbi request reprint PROSITE: a documented database using patterns and profiles as motif descriptors
    Christian J A Sigrist
    Swiss Institute of Bioinformatics CMU, University of Geneva
    Brief Bioinform 3:265-74. 2002
  8. ncbi request reprint FindPept, a tool to identify unmatched masses in peptide mass fingerprinting protein identification
    Alexandre Gattiker
    Swiss Institute of Bioinformatics, Geneva, Switzerland
    Proteomics 2:1435-44. 2002
  9. pmc Recent improvements to the PROSITE database
    Nicolas Hulo
    Swiss Institute of Bioinformatics SIB, CMU, University of Geneva, 1 rue Michel Servet, 1211 Geneva 4, Switzerland
    Nucleic Acids Res 32:D134-7. 2004
  10. pmc Integr8 and Genome Reviews: integrated views of complete genomes and proteomes
    Paul Kersey
    The EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 33:D297-302. 2005

Detail Information

Publications13

  1. ncbi request reprint Automated annotation of microbial proteomes in SWISS-PROT
    Alexandre Gattiker
    Swiss Prot group, Swiss Institute of Bioinformatics, 1 rue Michel Servet, CH 1211 Geneva 4, Switzerland
    Comput Biol Chem 27:49-58. 2003
    ..The results of this annotation are integrated in SWISS-PROT, and a website is provided at http://www.expasy.org/sprot/hamap/...
  2. pmc ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins
    Edouard De Castro
    Swiss Institute of Bioinformatics, 1 rue Michel Servet, CH 1211 Geneva 4, Switzerland
    Nucleic Acids Res 34:W362-5. 2006
    ..Several output modes are available including simple text views and a rich mode providing an interactive match and feature viewer with a graphical representation of results...
  3. pmc The Microbe browser for comparative genomics
    Alexandre Gattiker
    Swiss Institute of Bioinformatics, School of Life Sciences, Ecole Polytechnique Federale de Lausanne, 1015 Lausanne, Switzerland
    Nucleic Acids Res 37:W296-9. 2009
    ..The Microbe browser is available at http://microbe.vital-it.ch/. Programmatic access is available through the OMA application programming interface (API) at http://microbe.vital-it.ch/api...
  4. ncbi request reprint ScanProsite: a reference implementation of a PROSITE scanning tool
    Alexandre Gattiker
    Swiss Institute of Bioinformatics, Geneva, Switzerland
    Appl Bioinformatics 1:107-8. 2002
    ..We hereby propose a strict definition of how a PROSITE pattern is to be scanned against a sequence, and provide a reference implementation of a tool to scan PROSITE patterns, rules and profiles against protein sequences...
  5. ncbi request reprint The Swiss-Prot variant page and the ModSNP database: a resource for sequence and structure information on human protein variants
    Yum L Yip
    Swiss Prot group, Swiss Institute of Bioinformatics, Centre Medical Universitaire, Geneva, Switzerland
    Hum Mutat 23:464-70. 2004
    ..The Swiss-Prot variant pages are accessible from the NiceProt view of a Swiss-Prot entry on the ExPASy server (www.expasy.org/), via a hyperlink created for the stable and unique identifier FTId of each human SAP...
  6. pmc ExPASy: The proteomics server for in-depth protein knowledge and analysis
    Elisabeth Gasteiger
    Swiss Institute of Bioinformatics, Centre Medical Universitaire, 1 rue Michel Servet, 1211 Geneva 4, Switzerland
    Nucleic Acids Res 31:3784-8. 2003
    ..ExPASy started to operate in 1993, as the first WWW server in the field of life sciences. In addition to the main site in Switzerland, seven mirror sites in different continents currently serve the user community...
  7. ncbi request reprint PROSITE: a documented database using patterns and profiles as motif descriptors
    Christian J A Sigrist
    Swiss Institute of Bioinformatics CMU, University of Geneva
    Brief Bioinform 3:265-74. 2002
    ..In return, PROSITE is used to help annotate SWISS-PROT entries. The main characteristics and the techniques of family and domain identification used by PROSITE are reviewed in this paper...
  8. ncbi request reprint FindPept, a tool to identify unmatched masses in peptide mass fingerprinting protein identification
    Alexandre Gattiker
    Swiss Institute of Bioinformatics, Geneva, Switzerland
    Proteomics 2:1435-44. 2002
    ....
  9. pmc Recent improvements to the PROSITE database
    Nicolas Hulo
    Swiss Institute of Bioinformatics SIB, CMU, University of Geneva, 1 rue Michel Servet, 1211 Geneva 4, Switzerland
    Nucleic Acids Res 32:D134-7. 2004
    ..The latest version of PROSITE (release 18.17 of November 30, 2003) contains 1676 entries. The database is accessible at http://www.expasy.org/prosite/...
  10. pmc Integr8 and Genome Reviews: integrated views of complete genomes and proteomes
    Paul Kersey
    The EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
    Nucleic Acids Res 33:D297-302. 2005
    ..Integr8 also allows the users to customize their own interactive analysis, and to download both customized and prepared datasets for their own use. Integr8 is available at http://www.ebi.ac.uk/integr8...
  11. ncbi request reprint High-quality protein knowledge resource: SWISS-PROT and TrEMBL
    Claire O'Donovan
    EMBL Outstation, European Bioinformatics Institute, Hinxton, Cambridge, UK
    Brief Bioinform 3:275-84. 2002
    ....
  12. pmc The GermOnline cross-species systems browser provides comprehensive information on genes and gene products relevant for sexual reproduction
    Alexandre Gattiker
    Biozentrum and Swiss Institute of Bioinformatics, Klingelbergstrasse 50 70, CH 4056 Basel, Switzerland
    Nucleic Acids Res 35:D457-62. 2007
    ..Members of the research community are solicited to help GermOnline curators keep database entries on genes and gene products complete and accurate. The database is accessible at http://www.germonline.org/...
  13. pmc The conserved transcriptome in human and rodent male gametogenesis
    Frederic Chalmel
    Biozentrum and Swiss Institute of Bioinformatics, Klingelbergstrasse 50 70, CH 4056 Basel, Switzerland
    Proc Natl Acad Sci U S A 104:8346-51. 2007
    ..Expression profiling data further identified numerous conserved genes of biological and clinical interest previously unassociated with the mammalian male germ line...