Elisabeth Gasteiger

Summary

Affiliation: Swiss Institute of Bioinformatics
Country: Switzerland

Publications

  1. ncbi request reprint SWISS-PROT: connecting biomolecular knowledge via a protein database
    E Gasteiger
    Swiss Prot group, Swiss Institute of Bioinformatics, CMU, Geneve
    Curr Issues Mol Biol 3:47-55. 2001
  2. pmc ExPASy: The proteomics server for in-depth protein knowledge and analysis
    Elisabeth Gasteiger
    Swiss Institute of Bioinformatics, Centre Medical Universitaire, 1 rue Michel Servet, 1211 Geneva 4, Switzerland
    Nucleic Acids Res 31:3784-8. 2003
  3. pmc Identification of arginine- and lysine-methylation in the proteome of Saccharomyces cerevisiae and its functional implications
    Chi Nam Ignatius Pang
    School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW 2052, Australia
    BMC Genomics 11:92. 2010
  4. pmc ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins
    Edouard De Castro
    Swiss Institute of Bioinformatics, 1 rue Michel Servet, CH 1211 Geneva 4, Switzerland
    Nucleic Acids Res 34:W362-5. 2006
  5. pmc Infrastructure for the life sciences: design and implementation of the UniProt website
    Eric Jain
    Swiss Prot group, Swiss Institute of Bioinformatics, CMU, 1 Michel Servet, 1211 Geneva 4, Switzerland
    BMC Bioinformatics 10:136. 2009
  6. pmc The Universal Protein Resource (UniProt)
    Amos Bairoch
    Swiss Institute of Bioinformatics, Centre Medical Universitaire, 1 rue Michel Servet, 1211 Geneva 4, Switzerland
    Nucleic Acids Res 33:D154-9. 2005
  7. ncbi request reprint Annotation of post-translational modifications in the Swiss-Prot knowledge base
    Nathalie Farriol-Mathis
    Swiss Institute of Bioinformatics, Centre Medical Universitaire, Geneva, Switzerland
    Proteomics 4:1537-50. 2004
  8. ncbi request reprint Swiss-Prot: juggling between evolution and stability
    Amos Bairoch
    Swiss Institute of Bioinformatics, Centre Medical Universitaire, 1 rue Michel Servet, 1211 Geneva 4, Switzerland
    Brief Bioinform 5:39-55. 2004
  9. pmc The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
    Brigitte Boeckmann
    Swiss Institute of Bioinformatics, Centre Medical Universitaire, 1 rue Michel Servet, 1211 Geneva 4, Switzerland
    Nucleic Acids Res 31:365-70. 2003
  10. ncbi request reprint The Swiss-Prot variant page and the ModSNP database: a resource for sequence and structure information on human protein variants
    Yum L Yip
    Swiss Prot group, Swiss Institute of Bioinformatics, Centre Medical Universitaire, Geneva, Switzerland
    Hum Mutat 23:464-70. 2004

Detail Information

Publications15

  1. ncbi request reprint SWISS-PROT: connecting biomolecular knowledge via a protein database
    E Gasteiger
    Swiss Prot group, Swiss Institute of Bioinformatics, CMU, Geneve
    Curr Issues Mol Biol 3:47-55. 2001
    ..In this review we will highlight our effort in connecting biological information as demonstrated in the SWISS-PROT protein database...
  2. pmc ExPASy: The proteomics server for in-depth protein knowledge and analysis
    Elisabeth Gasteiger
    Swiss Institute of Bioinformatics, Centre Medical Universitaire, 1 rue Michel Servet, 1211 Geneva 4, Switzerland
    Nucleic Acids Res 31:3784-8. 2003
    ..ExPASy started to operate in 1993, as the first WWW server in the field of life sciences. In addition to the main site in Switzerland, seven mirror sites in different continents currently serve the user community...
  3. pmc Identification of arginine- and lysine-methylation in the proteome of Saccharomyces cerevisiae and its functional implications
    Chi Nam Ignatius Pang
    School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW 2052, Australia
    BMC Genomics 11:92. 2010
    ..This was done using the FindMod tool and 5 filters that took advantage of the high number of replicate analysis per protein and the presence of overlapping peptides...
  4. pmc ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins
    Edouard De Castro
    Swiss Institute of Bioinformatics, 1 rue Michel Servet, CH 1211 Geneva 4, Switzerland
    Nucleic Acids Res 34:W362-5. 2006
    ..Several output modes are available including simple text views and a rich mode providing an interactive match and feature viewer with a graphical representation of results...
  5. pmc Infrastructure for the life sciences: design and implementation of the UniProt website
    Eric Jain
    Swiss Prot group, Swiss Institute of Bioinformatics, CMU, 1 Michel Servet, 1211 Geneva 4, Switzerland
    BMC Bioinformatics 10:136. 2009
    ..Following several years of intense development and a year of public beta testing, the http://www.uniprot.org domain was switched to the newly developed site described in this paper in July 2008...
  6. pmc The Universal Protein Resource (UniProt)
    Amos Bairoch
    Swiss Institute of Bioinformatics, Centre Medical Universitaire, 1 rue Michel Servet, 1211 Geneva 4, Switzerland
    Nucleic Acids Res 33:D154-9. 2005
    ..The UniProt databases can be accessed online (http://www.uniprot.org) or downloaded in several formats (ftp://ftp.uniprot.org/pub). New releases are published every two weeks...
  7. ncbi request reprint Annotation of post-translational modifications in the Swiss-Prot knowledge base
    Nathalie Farriol-Mathis
    Swiss Institute of Bioinformatics, Centre Medical Universitaire, Geneva, Switzerland
    Proteomics 4:1537-50. 2004
    ..Finally we encourage once again the scientific community (i.e., both individual researchers and database maintainers) to interact with us, so that we can continuously enhance the quality and swiftness of our services...
  8. ncbi request reprint Swiss-Prot: juggling between evolution and stability
    Amos Bairoch
    Swiss Institute of Bioinformatics, Centre Medical Universitaire, 1 rue Michel Servet, 1211 Geneva 4, Switzerland
    Brief Bioinform 5:39-55. 2004
    ....
  9. pmc The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
    Brigitte Boeckmann
    Swiss Institute of Bioinformatics, Centre Medical Universitaire, 1 rue Michel Servet, 1211 Geneva 4, Switzerland
    Nucleic Acids Res 31:365-70. 2003
    ..Researchers are welcome to contribute their knowledge to the scientific community by submitting relevant findings to SWISS-PROT at swiss-prot@expasy.org...
  10. ncbi request reprint The Swiss-Prot variant page and the ModSNP database: a resource for sequence and structure information on human protein variants
    Yum L Yip
    Swiss Prot group, Swiss Institute of Bioinformatics, Centre Medical Universitaire, Geneva, Switzerland
    Hum Mutat 23:464-70. 2004
    ..The Swiss-Prot variant pages are accessible from the NiceProt view of a Swiss-Prot entry on the ExPASy server (www.expasy.org/), via a hyperlink created for the stable and unique identifier FTId of each human SAP...
  11. ncbi request reprint FindPept, a tool to identify unmatched masses in peptide mass fingerprinting protein identification
    Alexandre Gattiker
    Swiss Institute of Bioinformatics, Geneva, Switzerland
    Proteomics 2:1435-44. 2002
    ....
  12. ncbi request reprint Automated annotation of microbial proteomes in SWISS-PROT
    Alexandre Gattiker
    Swiss Prot group, Swiss Institute of Bioinformatics, 1 rue Michel Servet, CH 1211 Geneva 4, Switzerland
    Comput Biol Chem 27:49-58. 2003
    ..The results of this annotation are integrated in SWISS-PROT, and a website is provided at http://www.expasy.org/sprot/hamap/...
  13. pmc From protein sequences to 3D-structures and beyond: the example of the UniProt knowledgebase
    Ursula Hinz
    Swiss Prot group, Swiss Institute of Bioinformatics, 1 rue Michel Servet, 1211, Geneva, Switzerland
    Cell Mol Life Sci 67:1049-64. 2010
    ..uniprot.org/ ). It also evokes precautions that are necessary for successful predictions and extrapolations...
  14. ncbi request reprint ScanProsite: a reference implementation of a PROSITE scanning tool
    Alexandre Gattiker
    Swiss Institute of Bioinformatics, Geneva, Switzerland
    Appl Bioinformatics 1:107-8. 2002
    ..We hereby propose a strict definition of how a PROSITE pattern is to be scanned against a sequence, and provide a reference implementation of a tool to scan PROSITE patterns, rules and profiles against protein sequences...
  15. ncbi request reprint The Sulfinator: predicting tyrosine sulfation sites in protein sequences
    Flavio Monigatti
    Swiss Prot group, Swiss Institute of Bioinformatics, CMU, 1 rue Michel Servet, CH 1211 Geneva 4, Switzerland
    Bioinformatics 18:769-70. 2002
    ....