Alexandros Stamatakis

Summary

Country: Switzerland

Publications

  1. ncbi RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    Alexandros Stamatakis
    Swiss Federal Institute of Technology Lausanne, School of Computer and Communication Sciences Lab Prof Moret, Station 14, CH 1015 Lausanne, Switzerland
    Bioinformatics 22:2688-90. 2006
  2. ncbi AxPcoords & parallel AxParafit: statistical co-phylogenetic analyses on thousands of taxa
    Alexandros Stamatakis
    Ecole Polytechnique Federale de Lausanne, School of Computer and Communication Sciences, Laboratory for Computational Biology and Bioinformatics STATION 14, CH 1015 Lausanne, Switzerland
    BMC Bioinformatics 8:405. 2007
  3. ncbi ARB: a software environment for sequence data
    Wolfgang Ludwig
    Lehrstuhl fur Mikrobiologie, Technische Universitat Munchen, D 853530 Freising, Germany
    Nucleic Acids Res 32:1363-71. 2004
  4. ncbi Multiple evolutionary mechanisms drive papillomavirus diversification
    Marc Gottschling
    Skin Cancer Center Charite, University Hospital of Berlin, Berlin, Germany
    Mol Biol Evol 24:1242-58. 2007

Collaborators

Detail Information

Publications4

  1. ncbi RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    Alexandros Stamatakis
    Swiss Federal Institute of Technology Lausanne, School of Computer and Communication Sciences Lab Prof Moret, Station 14, CH 1015 Lausanne, Switzerland
    Bioinformatics 22:2688-90. 2006
    ..The program has been used to compute ML trees on two of the largest alignments to date containing 25,057 (1463 bp) and 2182 (51,089 bp) taxa, respectively. AVAILABILITY: icwww.epfl.ch/~stamatak..
  2. ncbi AxPcoords & parallel AxParafit: statistical co-phylogenetic analyses on thousands of taxa
    Alexandros Stamatakis
    Ecole Polytechnique Federale de Lausanne, School of Computer and Communication Sciences, Laboratory for Computational Biology and Bioinformatics STATION 14, CH 1015 Lausanne, Switzerland
    BMC Bioinformatics 8:405. 2007
    ..We present AxParafit and AxPcoords (Ax stands for Accelerated) which are highly optimized versions of Parafit and DistPCoA respectively...
  3. ncbi ARB: a software environment for sequence data
    Wolfgang Ludwig
    Lehrstuhl fur Mikrobiologie, Technische Universitat Munchen, D 853530 Freising, Germany
    Nucleic Acids Res 32:1363-71. 2004
    ..Currently, the package is used by numerous working groups worldwide...
  4. ncbi Multiple evolutionary mechanisms drive papillomavirus diversification
    Marc Gottschling
    Skin Cancer Center Charite, University Hospital of Berlin, Berlin, Germany
    Mol Biol Evol 24:1242-58. 2007
    ..The molecular data globally supports a complex evolutionary scenario for PVes, which is driven by multiple mechanisms but not exclusively by coevolution with corresponding hosts...