Arnaud Amzallag

Summary

Country: Switzerland

3D reconstruction and comparison of shapes of DNA minicircles observed by cryo-electron microscopy
Arnaud Amzallag
Laboratory for Computation and Visualization in Mathematics and Mechanics, EPFL FSB IMB, Ecole Polytechnique Federale de Lausanne, CH 1015 Lausanne, Switzerland
Nucleic Acids Res 34:e125. 2006
Probabilistic base calling of Solexa sequencing data
Jacques Rougemont
School of Life Sciences, Ecole Polytechnique Federale de Lausanne EPFL, 1015 Lausanne, Switzerland
BMC Bioinformatics 9:431. 2008
Bending modes of DNA directly addressed by cryo-electron microscopy of DNA minicircles
Davide Demurtas
Faculty of Biology and Medicine, Center for Integrative Genomics, University of Lausanne, School of Life Sciences, Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland
Nucleic Acids Res 37:2882-93. 2009

3D reconstruction and comparison of shapes of DNA minicircles observed by cryo-electron microscopy
Arnaud Amzallag
Laboratory for Computation and Visualization in Mathematics and Mechanics, EPFL FSB IMB, Ecole Polytechnique Federale de Lausanne, CH 1015 Lausanne, Switzerland
Nucleic Acids Res 34:e125. 2006
..We conclude that the presence of the TATA box sequence, which is believed to be easily bent, does not significantly affect the observed shapes...
Probabilistic base calling of Solexa sequencing data
Jacques Rougemont
School of Life Sciences, Ecole Polytechnique Federale de Lausanne EPFL, 1015 Lausanne, Switzerland
BMC Bioinformatics 9:431. 2008
....
Bending modes of DNA directly addressed by cryo-electron microscopy of DNA minicircles
Davide Demurtas
Faculty of Biology and Medicine, Center for Integrative Genomics, University of Lausanne, School of Life Sciences, Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland
Nucleic Acids Res 37:2882-93. 2009
..We corroborate the results of cryo-EM studies by using Bal31 nuclease to probe for the existence of kinks in 94-bp-long minicircles...