Johan A A Nylander

Summary

Affiliation: Uppsala University
Country: Sweden

Publications

  1. pmc Phylogenetic relationships of typical antbirds (Thamnophilidae) and test of incongruence based on Bayes factors
    Martin Irestedt
    Department of Vertebrate Zoology and Molecular Systematics Laboratory, Swedish Museum of Natural History, SE 104 05, Stockholm, Sweden
    BMC Evol Biol 4:23. 2004
  2. ncbi Bayesian phylogenetic analysis of combined data
    Johan A A Nylander
    Department of Systematic Zoology, Evolutionary Biology Centre, Uppsala University, Norbyvagen 18 D, SE 752 36 Uppsala, Sweden
    Syst Biol 53:47-67. 2004
  3. ncbi AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics
    Johan A A Nylander
    School of Computational Sciences, Florida State University, Tallahassee, Florida 32306, USA
    Bioinformatics 24:581-3. 2008
  4. ncbi A maximum-likelihood analysis of eight phylogenetic markers in gallwasps (Hymenoptera: Cynipidae): implications for insect phylogenetic studies
    Antonis Rokas
    Institute of Cell, Animal, and Population Biology, Ashworth Laboratories, University of Edinburgh, Edinburgh EH9 3JT, United Kingdom
    Mol Phylogenet Evol 22:206-19. 2002
  5. doi Accounting for phylogenetic uncertainty in biogeography: a Bayesian approach to dispersal-vicariance analysis of the thrushes (Aves: Turdus)
    Johan A A Nylander
    School of Computational Science, Florida State University, Tallahassee, Florida 32306, USA
    Syst Biol 57:257-68. 2008

Detail Information

Publications5

  1. pmc Phylogenetic relationships of typical antbirds (Thamnophilidae) and test of incongruence based on Bayes factors
    Martin Irestedt
    Department of Vertebrate Zoology and Molecular Systematics Laboratory, Swedish Museum of Natural History, SE 104 05, Stockholm, Sweden
    BMC Evol Biol 4:23. 2004
    ..We also explore how changes in the substitution models affected the observed incongruence between partitions of our data set...
  2. ncbi Bayesian phylogenetic analysis of combined data
    Johan A A Nylander
    Department of Systematic Zoology, Evolutionary Biology Centre, Uppsala University, Norbyvagen 18 D, SE 752 36 Uppsala, Sweden
    Syst Biol 53:47-67. 2004
    ..Thus, Bayes factors appear to be useful for selecting among complex models, but it is still unclear whether their use strikes a reasonable balance between model complexity and error in parameter estimates...
  3. ncbi AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics
    Johan A A Nylander
    School of Computational Sciences, Florida State University, Tallahassee, Florida 32306, USA
    Bioinformatics 24:581-3. 2008
    ..AVAILABILITY: The program is available as source under the GNU General Public License and as a web application at http://ceb.scs.fsu.edu/awty...
  4. ncbi A maximum-likelihood analysis of eight phylogenetic markers in gallwasps (Hymenoptera: Cynipidae): implications for insect phylogenetic studies
    Antonis Rokas
    Institute of Cell, Animal, and Population Biology, Ashworth Laboratories, University of Edinburgh, Edinburgh EH9 3JT, United Kingdom
    Mol Phylogenet Evol 22:206-19. 2002
    ..In contrast, the 18S rDNA marker is likely to be useful for the resolution of above-family-level relationships...
  5. doi Accounting for phylogenetic uncertainty in biogeography: a Bayesian approach to dispersal-vicariance analysis of the thrushes (Aves: Turdus)
    Johan A A Nylander
    School of Computational Science, Florida State University, Tallahassee, Florida 32306, USA
    Syst Biol 57:257-68. 2008
    ..The results support the role of Africa as a probable source area for intercontinental dispersals as suggested for other passerine groups, including basal diversification within the songbird tree...