Jan Eriksson

Summary

Affiliation: Swedish University of Agricultural Sciences
Country: Sweden

Publications

  1. ncbi request reprint Probity: a protein identification algorithm with accurate assignment of the statistical significance of the results
    Jan Eriksson
    Department of Chemistry, Swedish University of Agricultural Sciences, Box 7015, S 750 07, Uppsala, Sweden
    J Proteome Res 3:32-6. 2004
  2. pmc Modeling experimental design for proteomics
    Jan Eriksson
    Department of Chemistry, Swedish University of Agricultural Sciences, Uppsala, Sweden
    Methods Mol Biol 673:223-30. 2010
  3. ncbi request reprint Improving the success rate of proteome analysis by modeling protein-abundance distributions and experimental designs
    Jan Eriksson
    Department of Chemistry, Swedish University of Agricultural Sciences, Box 7015, SE 750 07, Uppsala, Sweden
    Nat Biotechnol 25:651-5. 2007
  4. ncbi request reprint The statistical significance of protein identification results as a function of the number of protein sequences searched
    Jan Eriksson
    Swedish University of Agricultural Sciences, Box 7015, SE 750 07 Uppsala, Sweden
    J Proteome Res 3:979-82. 2004
  5. ncbi request reprint Protein identification in complex mixtures
    Jan Eriksson
    Department of Chemistry, Swedish University of Agricultural Sciences, Box 7015, SE 750 07, Uppsala, Sweden
    J Proteome Res 4:387-93. 2005
  6. pmc Modeling mass spectrometry-based protein analysis
    Jan Eriksson
    Swedish University of Agricultural Sciences, Uppsala, Sweden
    Methods Mol Biol 694:109-17. 2011
  7. ncbi request reprint Optimizing search conditions for the mass fingerprint-based identification of proteins
    Elena Ossipova
    Department of Chemistry, Swedish University of Agricultural Sciences, Uppsala, Sweden
    Proteomics 6:2079-85. 2006
  8. ncbi request reprint A model of random mass-matching and its use for automated significance testing in mass spectrometric proteome analysis
    Jan Eriksson
    Department of Chemistry, Swedish University of Agricultural Sciences, Uppsala, Sweden
    Proteomics 2:262-70. 2002
  9. ncbi request reprint Method for differential detection and identification of components in protein mixtures analyzed by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
    Elena Ossipova
    Department of Chemistry, Swedish University of Agricultural Sciences, Box 7015, SE 750 07 Uppsala, Sweden
    Rapid Commun Mass Spectrom 18:2053-8. 2004
  10. ncbi request reprint Hardware optimization and serial implementation of a novel spiking neuron model for the POEtic tissue
    Oriol Torres
    Technical University of Catalunya, Campus Nord, Edifici C4, c Jordi Girona 1 3, 08034 Barcelona, Spain
    Biosystems 76:201-8. 2004

Collaborators

Detail Information

Publications11

  1. ncbi request reprint Probity: a protein identification algorithm with accurate assignment of the statistical significance of the results
    Jan Eriksson
    Department of Chemistry, Swedish University of Agricultural Sciences, Box 7015, S 750 07, Uppsala, Sweden
    J Proteome Res 3:32-6. 2004
    ....
  2. pmc Modeling experimental design for proteomics
    Jan Eriksson
    Department of Chemistry, Swedish University of Agricultural Sciences, Uppsala, Sweden
    Methods Mol Biol 673:223-30. 2010
    ..Here, we describe how proteomics experiments can be modeled and how computer simulations of these models can be used to improve experimental designs...
  3. ncbi request reprint Improving the success rate of proteome analysis by modeling protein-abundance distributions and experimental designs
    Jan Eriksson
    Department of Chemistry, Swedish University of Agricultural Sciences, Box 7015, SE 750 07, Uppsala, Sweden
    Nat Biotechnol 25:651-5. 2007
    ..Our approach demonstrates that simple changes in typical experimental designs can enhance the success rate of proteome analysis by five- to tenfold...
  4. ncbi request reprint The statistical significance of protein identification results as a function of the number of protein sequences searched
    Jan Eriksson
    Swedish University of Agricultural Sciences, Box 7015, SE 750 07 Uppsala, Sweden
    J Proteome Res 3:979-82. 2004
    ..We also provide an example on how the practitioner's choice of taxonomic constraints influences the statistical significance...
  5. ncbi request reprint Protein identification in complex mixtures
    Jan Eriksson
    Department of Chemistry, Swedish University of Agricultural Sciences, Box 7015, SE 750 07, Uppsala, Sweden
    J Proteome Res 4:387-93. 2005
    ....
  6. pmc Modeling mass spectrometry-based protein analysis
    Jan Eriksson
    Swedish University of Agricultural Sciences, Uppsala, Sweden
    Methods Mol Biol 694:109-17. 2011
    ..These methods require a detailed understanding of the information value of the data. Here, we describe how the information value can be elucidated by performing simulations using synthetic data...
  7. ncbi request reprint Optimizing search conditions for the mass fingerprint-based identification of proteins
    Elena Ossipova
    Department of Chemistry, Swedish University of Agricultural Sciences, Uppsala, Sweden
    Proteomics 6:2079-85. 2006
    ....
  8. ncbi request reprint A model of random mass-matching and its use for automated significance testing in mass spectrometric proteome analysis
    Jan Eriksson
    Department of Chemistry, Swedish University of Agricultural Sciences, Uppsala, Sweden
    Proteomics 2:262-70. 2002
    ..g. tandem mass spectrometry in order to determine the protein identity...
  9. ncbi request reprint Method for differential detection and identification of components in protein mixtures analyzed by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
    Elena Ossipova
    Department of Chemistry, Swedish University of Agricultural Sciences, Box 7015, SE 750 07 Uppsala, Sweden
    Rapid Commun Mass Spectrom 18:2053-8. 2004
    ..The method presented here has the potential to allow identification of the protein component that differs in cases where a gel-spot is poorly resolved and contains several proteins...
  10. ncbi request reprint Hardware optimization and serial implementation of a novel spiking neuron model for the POEtic tissue
    Oriol Torres
    Technical University of Catalunya, Campus Nord, Edifici C4, c Jordi Girona 1 3, 08034 Barcelona, Spain
    Biosystems 76:201-8. 2004
    ..Some experiments using dynamic grading patterns have been used in order to test the learning capabilities of the model. Finally, the serial implementation has been realized...
  11. ncbi request reprint Bioinformatic and enzymatic characterization of the MAPEG superfamily
    Anders Bresell
    IFM Bioinformatics, Linkoping University, Sweden
    FEBS J 272:1688-703. 2005
    ....