- Genome-wide survey for biologically functional pseudogenesOrjan Svensson
Stockholm Bioinformatics Centre, Royal Institute of Technology, AlbaNova University Center, Stockholm, Sweden
PLoS Comput Biol 2:e46. 2006..To separate pseudogenes from protein-coding genes, we use standard methods, utilizing in-frame disablements, as well as a probabilistic filter based on Ka/Ks ratios...
- Birth-death prior on phylogeny and speed datingOrjan Akerborg
Stockholm Bioinformatics Centre, AlbaNova, Stockholm University, SE 10691 Stockholm, Sweden
BMC Evol Biol 8:77. 2008..This problem has, however, mainly been analysed in the Markov chain Monte Carlo (MCMC) framework, an approach requiring computation times of hours or days when applied to large phylogenies...