Fredrik Lysholm

Summary

Country: Sweden

Publications

  1. pmc Highly improved homopolymer aware nucleotide-protein alignments with 454 data
    Fredrik Lysholm
    IFM Bioinformatics and SeRC Swedish e Science Research Centre, Linkoping University, S 581 83, Linkoping, Sweden
    BMC Bioinformatics 13:230. 2012
  2. pmc An efficient simulator of 454 data using configurable statistical models
    Fredrik Lysholm
    IFM Bioinformatics and SeRC Swedish e Science Research Centre, Linkoping University, S 581 83 Linkoping, Sweden
    BMC Res Notes 4:449. 2011
  3. pmc An unbiased metagenomic search for infectious agents using monozygotic twins discordant for chronic fatigue
    Patrick F Sullivan
    Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
    BMC Microbiol 11:2. 2011
  4. pmc FAAST: Flow-space Assisted Alignment Search Tool
    Fredrik Lysholm
    IFM Bioinformatics and SeRC Swedish e Science Research Centre, Linkoping University, S 581 83 Linkoping, Sweden
    BMC Bioinformatics 12:293. 2011
  5. pmc Characterization of the viral microbiome in patients with severe lower respiratory tract infections, using metagenomic sequencing
    Fredrik Lysholm
    IFM Bioinformatics and Swedish e Science Research Centre SeRC, Linkoping University, Linkoping, Sweden
    PLoS ONE 7:e30875. 2012

Collaborators

Detail Information

Publications5

  1. pmc Highly improved homopolymer aware nucleotide-protein alignments with 454 data
    Fredrik Lysholm
    IFM Bioinformatics and SeRC Swedish e Science Research Centre, Linkoping University, S 581 83, Linkoping, Sweden
    BMC Bioinformatics 13:230. 2012
    ..These gaps are particularly troublesome for translated search tools such as BLASTx where they introduce frame-shifts and result in regions of decreased identity and/or terminated alignments, which affect further analysis...
  2. pmc An efficient simulator of 454 data using configurable statistical models
    Fredrik Lysholm
    IFM Bioinformatics and SeRC Swedish e Science Research Centre, Linkoping University, S 581 83 Linkoping, Sweden
    BMC Res Notes 4:449. 2011
    ..abstract:..
  3. pmc An unbiased metagenomic search for infectious agents using monozygotic twins discordant for chronic fatigue
    Patrick F Sullivan
    Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
    BMC Microbiol 11:2. 2011
    ..Controls were the unaffected monozygotic co-twins of cases, and serum samples were obtained at the same place and time...
  4. pmc FAAST: Flow-space Assisted Alignment Search Tool
    Fredrik Lysholm
    IFM Bioinformatics and SeRC Swedish e Science Research Centre, Linkoping University, S 581 83 Linkoping, Sweden
    BMC Bioinformatics 12:293. 2011
    ..These errors are less efficiently detected by most conventional alignment programs and may produce inaccurate alignments...
  5. pmc Characterization of the viral microbiome in patients with severe lower respiratory tract infections, using metagenomic sequencing
    Fredrik Lysholm
    IFM Bioinformatics and Swedish e Science Research Centre SeRC, Linkoping University, Linkoping, Sweden
    PLoS ONE 7:e30875. 2012
    ..The study also identified one novel type of Rhinovirus C, and identified a number of previously undescribed viral genetic fragments of unknown origin...