Erik Kristiansson

Summary

Country: Sweden

Publications

  1. doi request reprint Evolutionary forces act on promoter length: identification of enriched cis-regulatory elements
    Erik Kristiansson
    Department of Zoology, University of Gothenburg, Goteborg, Sweden
    Mol Biol Evol 26:1299-307. 2009
  2. pmc Characterization of the Zoarces viviparus liver transcriptome using massively parallel pyrosequencing
    Erik Kristiansson
    Department of Zoology, University of Gothenburg, Goteborg, Sweden
    BMC Genomics 10:345. 2009
  3. doi request reprint Hepatic transcriptome profiling indicates differential mRNA expression of apoptosis and immune related genes in eelpout (Zoarces viviparus) caught at Göteborg harbor, Sweden
    Noomi Asker
    Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg, Sweden
    Aquat Toxicol 130:58-67. 2013
  4. doi request reprint Does ketoprofen or diclofenac pose the lowest risk to fish?
    Filip Cuklev
    Institute for Neuroscience and Physiology, Sahlgrenska Academy, University of Gothenburg, Goteborg, Sweden
    J Hazard Mater 229:100-6. 2012
  5. doi request reprint Diclofenac in fish: blood plasma levels similar to human therapeutic levels affect global hepatic gene expression
    Filip Cuklev
    Sahlgrenska Academy at the University of Gothenburg, Goteborg, Sweden
    Environ Toxicol Chem 30:2126-34. 2011
  6. doi request reprint Physiology and mRNA expression in rainbow trout (Oncorhynchus mykiss) after long-term exposure to the new antifoulant medetomidine
    Anna Lennquist
    Department of Zoology Zoophysiology, University of Gothenburg, Sweden
    Comp Biochem Physiol C Toxicol Pharmacol 154:234-41. 2011
  7. doi request reprint Pharmaceutical industry effluent diluted 1:500 affects global gene expression, cytochrome P450 1A activity, and plasma phosphate in fish
    Lina Gunnarsson
    Department of Neuroscience and Physiology, the Sahlgrenska Academy at University of Göteborg, Goteborg, Sweden
    Environ Toxicol Chem 28:2639-47. 2009
  8. pmc Genetic basis of arsenite and cadmium tolerance in Saccharomyces cerevisiae
    Michael Thorsen
    Department of Cell and Molecular Biology Microbiology, University of Gothenburg, S 405 30 Gothenburg, Sweden
    BMC Genomics 10:105. 2009
  9. pmc Pyrosequencing of antibiotic-contaminated river sediments reveals high levels of resistance and gene transfer elements
    Erik Kristiansson
    Department of Neuroscience and Physiology, The Sahlgrenska Academy at the University of Gothenburg, Goteborg, Sweden
    PLoS ONE 6:e17038. 2011
  10. doi request reprint An outlook on the fungal internal transcribed spacer sequences in GenBank and the introduction of a web-based tool for the exploration of fungal diversity
    Martin Ryberg
    Department of Plant and Environmental Sciences, University of Gothenburg, PO Box 461, 405 30 Goteborg, Sweden
    New Phytol 181:471-7. 2009

Detail Information

Publications22

  1. doi request reprint Evolutionary forces act on promoter length: identification of enriched cis-regulatory elements
    Erik Kristiansson
    Department of Zoology, University of Gothenburg, Goteborg, Sweden
    Mol Biol Evol 26:1299-307. 2009
    ..Identification of cis-regulatory elements in Saccharomyces cerevisiae can be done with the web service located at http://enricher.zool.gu.se...
  2. pmc Characterization of the Zoarces viviparus liver transcriptome using massively parallel pyrosequencing
    Erik Kristiansson
    Department of Zoology, University of Gothenburg, Goteborg, Sweden
    BMC Genomics 10:345. 2009
    ..The scarce information about this species genome has however restrained the use of efficient molecular-level assays, such as gene expression microarrays...
  3. doi request reprint Hepatic transcriptome profiling indicates differential mRNA expression of apoptosis and immune related genes in eelpout (Zoarces viviparus) caught at Göteborg harbor, Sweden
    Noomi Asker
    Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg, Sweden
    Aquat Toxicol 130:58-67. 2013
    ....
  4. doi request reprint Does ketoprofen or diclofenac pose the lowest risk to fish?
    Filip Cuklev
    Institute for Neuroscience and Physiology, Sahlgrenska Academy, University of Gothenburg, Goteborg, Sweden
    J Hazard Mater 229:100-6. 2012
    ....
  5. doi request reprint Diclofenac in fish: blood plasma levels similar to human therapeutic levels affect global hepatic gene expression
    Filip Cuklev
    Sahlgrenska Academy at the University of Gothenburg, Goteborg, Sweden
    Environ Toxicol Chem 30:2126-34. 2011
    ..In contrast to some previously reported results, the bioconcentration factor was found to be stable (4.02 ± 0.75 for blood plasma and 2.54 ± 0.36 for liver) regardless of the water concentration...
  6. doi request reprint Physiology and mRNA expression in rainbow trout (Oncorhynchus mykiss) after long-term exposure to the new antifoulant medetomidine
    Anna Lennquist
    Department of Zoology Zoophysiology, University of Gothenburg, Sweden
    Comp Biochem Physiol C Toxicol Pharmacol 154:234-41. 2011
    ..Taken together, the results suggest that medetomidine at investigated concentrations could interfere with carbohydrate metabolism of exposed fish but without any clear consequences for growth...
  7. doi request reprint Pharmaceutical industry effluent diluted 1:500 affects global gene expression, cytochrome P450 1A activity, and plasma phosphate in fish
    Lina Gunnarsson
    Department of Neuroscience and Physiology, the Sahlgrenska Academy at University of Göteborg, Goteborg, Sweden
    Environ Toxicol Chem 28:2639-47. 2009
    ..The pattern of regulated genes may contribute to the identification of mechanisms of sublethal toxicity, as well as illuminate possible causative agents...
  8. pmc Genetic basis of arsenite and cadmium tolerance in Saccharomyces cerevisiae
    Michael Thorsen
    Department of Cell and Molecular Biology Microbiology, University of Gothenburg, S 405 30 Gothenburg, Sweden
    BMC Genomics 10:105. 2009
    ..Exposure to these nonessential toxic metals may result in a variety of human diseases including cancer. However, arsenic and cadmium toxicity targets and the cellular systems contributing to tolerance acquisition are not fully known...
  9. pmc Pyrosequencing of antibiotic-contaminated river sediments reveals high levels of resistance and gene transfer elements
    Erik Kristiansson
    Department of Neuroscience and Physiology, The Sahlgrenska Academy at the University of Gothenburg, Goteborg, Sweden
    PLoS ONE 6:e17038. 2011
    ..The entire life-cycle of antibiotic substances, both before, under and after usage, should therefore be considered to fully evaluate their role in the promotion of resistance...
  10. doi request reprint An outlook on the fungal internal transcribed spacer sequences in GenBank and the introduction of a web-based tool for the exploration of fungal diversity
    Martin Ryberg
    Department of Plant and Environmental Sciences, University of Gothenburg, PO Box 461, 405 30 Goteborg, Sweden
    New Phytol 181:471-7. 2009
    ..html#genus_search) offers new means, particularly for mycorrhizal and plant pathogenic fungi, to examine the IIS in GenBank in a taxon-oriented framework and to explore their metadata in an easily accessible and time-efficient manner...
  11. pmc Sensitive and robust gene expression changes in fish exposed to estrogen--a microarray approach
    Lina Gunnarsson
    Department of Neuroscience and Physiology, The Sahlgrenska Academy at Goteborg University, Goteborg, Sweden
    BMC Genomics 8:149. 2007
    ..Induction of zona pellucida genes may be more sensitive but their specificities are not as clear. The objective of this study was to find additional sensitive and robust candidate biomarkers of estrogenic exposure...
  12. pmc Predicting functional upstream open reading frames in Saccharomyces cerevisiae
    - Selpi
    Department of Applied Mechanics, Chalmers University of Technology, Goteborg, Sweden
    BMC Bioinformatics 10:451. 2009
    ..Unfortunately, wet-experiments to verify that uORFs are functional are expensive...
  13. doi request reprint Expression profiling of GIST: CD133 is associated with KIT exon 11 mutations, gastric location and poor prognosis
    Gabriella Arne
    Lundberg Laboratory for Cancer Research, Department of Pathology, Sahlgrenska Academy at the University of Gothenburg, Goteborg, Sweden
    Int J Cancer 129:1149-61. 2011
    ..CD133 is expressed in a subset of predominantly gastric GISTs with KIT exon 11 mutations and poor prognosis...
  14. doi request reprint Colour and melanophore function in rainbow trout after long term exposure to the new antifoulant medetomidine
    Anna Lennquist
    Department of Zoology Zoophysiology, University of Gothenburg, Sweden
    Chemosphere 80:1050-5. 2010
    ..The number of melanophores in the scales did not change significantly after long term exposure to medetomidine. These results suggest that the observed paleness may be reversible, even after chronic exposure...
  15. ncbi request reprint Evolutionary conservation of human drug targets in organisms used for environmental risk assessments
    Lina Gunnarsson
    Department of Neuroscience and Physiology, Sahlgrenska Academy, University of Gothenburg, Box 434, SE 405 30 Goteborg, Sweden
    Environ Sci Technol 42:5807-13. 2008
    ..Moreover, we suggest that the results can be used to interpret the relevance of existing ecotoxicity data...
  16. doi request reprint An open source chimera checker for the fungal ITS region
    R H Nilsson
    Department of Plant and Environmental Sciences, University of Gothenburg, Box 461, 405 30 Goteborg, Sweden
    Mol Ecol Resour 10:1076-81. 2010
    ..The proportion of chimeras in the sequence databases can be hypothesized to increase as emerging sequencing technologies drawing from pooled DNA samples are becoming important tools in molecular ecology research...
  17. pmc A software pipeline for processing and identification of fungal ITS sequences
    R Henrik Nilsson
    University of Gothenburg, Department of Plant and Environmental Sciences, Box 461, 405 30 Goteborg, Sweden
    Source Code Biol Med 4:1. 2009
    ..The performance of the pipeline was evaluated on a dataset of 350 ITS sequences from fungi growing as epiphytes on building material...
  18. doi request reprint The ITS region as a target for characterization of fungal communities using emerging sequencing technologies
    Rolf Henrik Nilsson
    Department of Plant and Environmental Sciences, University of Gothenburg, Goteborg, Sweden
    FEMS Microbiol Lett 296:97-101. 2009
    ....
  19. doi request reprint Functional verification of computationally predicted qnr genes
    Carl Fredrik Flach
    Department of Infectious Diseases, University of Gothenburg, Gothenburg, Sweden
    Ann Clin Microbiol Antimicrob 12:34. 2013
    ..We recently developed and applied probabilistic models to identify tentative novel qnr genes in large public collections of DNA sequence data including fragmented metagenomes...
  20. doi request reprint BacMet: antibacterial biocide and metal resistance genes database
    Chandan Pal
    Department of Infectious Diseases, Institute of Biomedicine, The Sahlgrenska Academy at the University of Gothenburg, Gothenburg, SE 413 46, Sweden, Department of Plant and Environmental Sciences, University of Copenhagen, Copenhagen, DK 1871, Denmark and Department of Mathematical Sciences, Chalmers University of Technology, SE 412 96, Gothenburg, Sweden
    Nucleic Acids Res 42:D737-43. 2014
    ..All resistance genes in the BacMet database have been organized according to their molecular function and induced resistance phenotype. ..
  21. pmc A novel method to discover fluoroquinolone antibiotic resistance (qnr) genes in fragmented nucleotide sequences
    Fredrik Boulund
    Department of Mathematical Sciences, Chalmers University of Technology and University of Gothenburg, Goteborg, SE 412 96, Sweden
    BMC Genomics 13:695. 2012
    ..The vast amount of data generated by shotgun metagenomics can therefore be used to explore the diversity of qnr genes in more detail...
  22. doi request reprint ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes
    Erik Kristiansson
    Department of Zoology, University of Gothenburg, Department of Neuroscience and Physiology, The Sahlgrenska Academy at the University of Gothenburg, Goteborg, Sweden
    Bioinformatics 25:2737-8. 2009
    ..We demonstrate the potential of ShotgunFunctionalizeR by performing a regression analysis on metagenomes sampled at multiple depths in the Pacific Ocean...